{"id":"W2982377894","doi":"10.1186/s13059-019-1833-x","title":"Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues","year":2019,"lang":"en","type":"article","venue":"Genome biology","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"European Research Council; Medical Research Council; Fondazione Pierfranco e Luisa Mariani; Bundesministerium für Bildung und Forschung; E-Rare; Agence Nationale de la Recherche; Biotechnology and Biological Sciences Research Council; Ministero della Salute","keywords":"Biology; Endogenous retrovirus; Imprinting (psychology); Embryonic stem cell; Genomic imprinting; Genetics; Computational biology; Human genetics; Endogeny; Evolutionary biology; Cell biology; Genome; Gene; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000240515,0.0002081014,0.000286054,0.0000995958,0.00006193032,0.0000184473,0.0003308275,0.0003001101,0.0001471737],"category_scores_gemma":[0.00005716111,0.0002062123,0.000116672,0.0001342899,0.0000838522,0.000003592824,0.0003249777,0.0001877796,0.000251554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003841532,"about_ca_system_score_gemma":0.0001306278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000123449,"about_ca_topic_score_gemma":0.00007058417,"domain_scores_codex":[0.9983122,0.00008499421,0.000337101,0.0005975221,0.00006169408,0.0006065312],"domain_scores_gemma":[0.9992552,0.00001846466,0.0001047854,0.000489955,0.00004568508,0.00008587837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000008735418,0.00003359855,0.1278004,0.00001151248,0.00002776965,0.000002686677,0.00006633796,0.00003398247,0.8697997,0.0001060651,0.000009738489,0.002099453],"study_design_scores_gemma":[0.002658702,0.002541556,0.7678545,0.00003495148,0.00003186819,0.0003840937,0.0005115856,0.0001870084,0.1439431,0.0003523619,0.08043092,0.001069356],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935228,0.001163638,0.0002635531,0.0001036629,0.0003403954,0.0003201489,0.00001016851,0.00001456512,0.004261107],"genre_scores_gemma":[0.9973358,0.0002281308,0.001074845,0.0001739859,0.0002070314,0.00002865729,0.0001026787,0.00002967116,0.0008192027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7258565,"threshold_uncertainty_score":0.8409091,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01450027822078375,"score_gpt":0.245140502054765,"score_spread":0.2306402238339813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}