{"id":"W2982430379","doi":"10.1093/ofid/ofz466","title":"Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalsa Corporation","funders":"National Institute of Allergy and Infectious Diseases; Defense Advanced Research Projects Agency; National Institutes of Health","keywords":"Medicine; Host (biology); Gene; Gene expression; Virology; Computational biology; Genetics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002025486,0.0006548835,0.0005201508,0.001012069,0.0002833026,0.0007233722,0.000323352,0.000538846,0.002546003],"category_scores_gemma":[0.00299926,0.0002653616,0.0002255838,0.0003743212,0.0005183697,0.0003322591,0.0003606703,0.0005871396,0.001133378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003464233,"about_ca_system_score_gemma":0.0005406567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001421126,"about_ca_topic_score_gemma":0.002946287,"domain_scores_codex":[0.9986492,0.0003854564,0.00009059029,0.0002933004,0.0004770753,0.0001045175],"domain_scores_gemma":[0.9985901,0.0006509972,0.0001697067,0.0001087337,0.000400012,0.00008042013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002460788,0.0004068097,0.1427042,0.0002830375,0.0001026162,0.0003023519,0.0002991977,0.0007407527,0.7662896,0.0003806089,0.002087805,0.08394231],"study_design_scores_gemma":[0.0002175088,0.004312574,0.26532,0.0001079329,0.0001676852,0.002402517,0.0004736633,0.03623657,0.6816054,0.0006247205,0.008452316,0.00007915662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8327512,0.003101137,0.1544304,0.0004898272,0.0002658752,0.001167868,0.001955956,0.001812497,0.00402531],"genre_scores_gemma":[0.8668187,0.0009006712,0.1230805,0.0006674473,0.0001121924,0.0007512289,0.001621069,0.0001202361,0.005927916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002546003,"threshold_uncertainty_score":0.01071191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006384027938860527,"score_gpt":0.2743969008878106,"score_spread":0.2680128729489501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}