{"id":"W2982430379","doi":"10.1093/ofid/ofz466","title":"Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalsa Corporation","funders":"National Institute of Allergy and Infectious Diseases; Defense Advanced Research Projects Agency; National Institutes of Health","keywords":"Medicine; Host (biology); Gene; Gene expression; Virology; Computational biology; Genetics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007788531,0.0002297261,0.0001943626,0.00008720109,0.000197397,0.000117662,0.0003685478,0.0001615388,0.0002720452],"category_scores_gemma":[0.0002357314,0.0002175251,0.0001275861,0.0001861389,0.00003197497,0.00001430261,0.000781515,0.00007763646,0.0002085429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003335126,"about_ca_system_score_gemma":0.00009651032,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004167151,"about_ca_topic_score_gemma":0.0001444487,"domain_scores_codex":[0.998689,0.00005403109,0.0002059003,0.000621691,0.00009711884,0.0003322919],"domain_scores_gemma":[0.9987916,0.0000330549,0.00007547619,0.0007192579,0.0001035678,0.0002770034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005695825,0.0004554709,0.3613451,0.000007763641,0.00002231807,9.042285e-7,0.000005319342,0.00003172413,0.6061535,0.000377108,0.02610686,0.005436994],"study_design_scores_gemma":[0.0005640805,0.001615712,0.04836087,0.00004153576,0.00003316188,0.00001382516,0.00001166316,0.000007110814,0.4717738,0.0005351765,0.476545,0.000498049],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9760687,0.0002033406,0.01222772,0.0004419624,0.0002621849,0.002535454,0.0003981246,0.0001072872,0.007755224],"genre_scores_gemma":[0.9906659,0.0001400767,0.001485021,0.005044418,0.0001232104,0.001243963,0.0006139241,0.00004509902,0.0006384011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4504381,"threshold_uncertainty_score":0.8870416,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006384027938860527,"score_gpt":0.2743969008878106,"score_spread":0.2680128729489501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}