{"id":"W2982503552","doi":"10.1101/822593","title":"Establishment of an eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled from Short and Long Reads","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"National Institutes of Health; Maryland Advanced Research Computing Center; Johns Hopkins University","keywords":"Reference genome; Computational biology; Genome; Sequence assembly; Biology; Nanopore sequencing; Genetics; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001431208,0.0008605747,0.0008886314,0.00150695,0.0007121331,0.0009751488,0.001038019,0.0009867164,0.003366056],"category_scores_gemma":[0.002395764,0.0007782221,0.0007781783,0.001666772,0.0002799167,0.0005672246,0.001081363,0.001572232,0.003191527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006333421,"about_ca_system_score_gemma":0.0007892569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002692641,"about_ca_topic_score_gemma":0.003912929,"domain_scores_codex":[0.9989603,0.0001156006,0.0001174676,0.0004224739,0.0002982725,0.00008591263],"domain_scores_gemma":[0.9989032,0.0001962706,0.0001212395,0.0002135092,0.0005036222,0.00006227133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004152234,0.00005717788,0.00289653,0.0004020598,0.00008059805,0.000367654,0.0003387509,0.00255902,0.9644376,0.001311965,0.002821802,0.02431154],"study_design_scores_gemma":[0.00007145076,0.0004658789,0.01549622,0.0001665379,0.0002128771,0.0006663886,0.0002426051,0.02028627,0.8884039,0.0009621911,0.07289773,0.0001279658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4028145,0.002089585,0.5086517,0.0005899273,0.0004661533,0.001087196,0.06631684,0.01008817,0.007895868],"genre_scores_gemma":[0.2361067,0.0009067319,0.5974763,0.0003622665,0.00004462229,0.0009767456,0.152524,0.00292973,0.008672877],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003366056,"threshold_uncertainty_score":0.01126057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01252168781982952,"score_gpt":0.2557697014557606,"score_spread":0.243248013635931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}