{"id":"W2984608145","doi":"10.1111/1755-0998.13115","title":"Museum epigenomics: Characterizing cytosine methylation in historic museum specimens","year":2019,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Compute Canada; University of Michigan; Western Canada Research Grid; University of Miami; National Science Foundation","keywords":"Biology; DNA methylation; Methylation; Epigenetics; Epigenomics; Evolutionary biology; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006369092,0.000261074,0.0002078528,0.001441927,0.0005715082,0.0004945957,0.0004244773,0.0004467625,0.001343306],"category_scores_gemma":[0.0009342298,0.0002541547,0.000265268,0.001234922,0.0004613498,0.0003183517,0.0005871766,0.0003506484,0.000477295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002372819,"about_ca_system_score_gemma":0.0002504245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003964296,"about_ca_topic_score_gemma":0.02177144,"domain_scores_codex":[0.9996735,0.00004565299,0.00002093779,0.0001231888,0.0001080177,0.00002868628],"domain_scores_gemma":[0.9995548,0.0000498819,0.0001472,0.00007529378,0.0001341911,0.00003866953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001344308,0.00002908557,0.3093524,0.0002518978,0.0002171319,0.0002308664,0.001733365,0.0004222933,0.6309834,0.0004238474,0.0005144941,0.05570683],"study_design_scores_gemma":[0.000005457508,0.0001767327,0.9136789,0.0000500795,0.000139362,0.0009063873,0.0005086928,0.0009166694,0.0701298,0.0003195726,0.01314104,0.0000271739],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9679058,0.001613592,0.02279926,0.00008416321,0.00002484232,0.0001071306,0.003715148,0.0001949135,0.003555249],"genre_scores_gemma":[0.9228256,0.001617682,0.06553148,0.0001751407,0.00004598034,0.0001920078,0.006036873,0.0001507491,0.003424453],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003964296,"threshold_uncertainty_score":0.007882476,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005799193676350752,"score_gpt":0.2179609935394623,"score_spread":0.2121617998631115,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}