{"id":"W2984784419","doi":"10.1139/gen-2019-0071","title":"Development of a core SNP panel for cacao (<i>Theobroma cacao</i> L.) identity analysis","year":2019,"lang":"en","type":"article","venue":"Genome","topic":"Cocoa and Sweet Potato Agronomy","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Theobroma; Biology; Single-nucleotide polymorphism; Linkage disequilibrium; SNP; Genetics; Tag SNP; Minor allele frequency; Loss of heterozygosity; Allele; Genotype; Botany; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005791987,0.000713163,0.001505154,0.001909351,0.0007927729,0.001220398,0.001167968,0.0008292095,0.003185143],"category_scores_gemma":[0.005526986,0.0008072208,0.001090255,0.001320409,0.0002999467,0.0006864039,0.001616902,0.0012819,0.00231192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004440729,"about_ca_system_score_gemma":0.001435744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002959971,"about_ca_topic_score_gemma":0.006287545,"domain_scores_codex":[0.997166,0.00061758,0.0002176478,0.0009890746,0.0007806519,0.0002290381],"domain_scores_gemma":[0.996758,0.0006383075,0.000291725,0.0005235363,0.001461203,0.0003272291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001096491,0.0003921069,0.04342232,0.0003778653,0.0003208709,0.0002858899,0.0005586456,0.00855806,0.7382933,0.001158475,0.003641411,0.2018945],"study_design_scores_gemma":[0.0004222949,0.002045927,0.2751513,0.0003231224,0.001094194,0.001573808,0.0005130002,0.1630259,0.4972272,0.003032907,0.05524641,0.0003439302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3349262,0.0006086631,0.6381945,0.0001911889,0.0001011276,0.002874648,0.01211939,0.003949133,0.007035078],"genre_scores_gemma":[0.1465252,0.0001177258,0.8367171,0.0002121521,0.00002072296,0.001256085,0.01292742,0.0003358059,0.001887966],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005791987,"threshold_uncertainty_score":0.03063136,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05361067880291761,"score_gpt":0.2482478764429066,"score_spread":0.194637197639989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}