{"id":"W2984964263","doi":"10.1136/thoraxjnl-2019-214098","title":"<i>Burkholderia cenocepacia</i>ET12 transmission in adults with cystic fibrosis","year":2019,"lang":"en","type":"article","venue":"Thorax","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; SickKids Foundation; Hospital for Sick Children","funders":"Cystic Fibrosis Foundation","keywords":"Burkholderia cenocepacia; Burkholderia cepacia complex; Medicine; Cystic fibrosis; Epidemiology; Transmission (telecommunications); Whole genome sequencing; Burkholderia; Microbiology; Internal medicine; Genome; Genetics; Biology; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002094795,0.0001985147,0.0003915099,0.0001758815,0.00003441523,0.000022435,0.0001297309,0.00008369987,0.0009237116],"category_scores_gemma":[0.00007870817,0.0001433028,0.00005696511,0.0005085591,0.00007925442,0.0001684097,0.00003086018,0.0002933077,0.0003651136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001029551,"about_ca_system_score_gemma":0.0001411749,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001009474,"about_ca_topic_score_gemma":0.00003001673,"domain_scores_codex":[0.9982384,0.00006216759,0.0002493784,0.0004097126,0.0005478952,0.000492401],"domain_scores_gemma":[0.9990534,0.0001526419,0.00004796821,0.0004121531,0.00007938354,0.0002544188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.03400119,0.0008943886,0.0890177,0.004677827,0.0001023802,0.0004980662,0.003027676,0.0003260323,0.7488011,0.0002896259,0.002493806,0.1158703],"study_design_scores_gemma":[0.04038743,0.01530246,0.5866792,0.02540929,0.0002705855,0.0006533082,0.003004597,0.01023523,0.1742475,0.001114556,0.1405837,0.002112159],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881233,0.001114766,0.0007897328,0.0006583222,0.00007033245,0.001043943,0.00001591983,0.00009740575,0.008086272],"genre_scores_gemma":[0.9841718,0.00009415711,0.01369751,0.0001032025,0.00005894424,0.00003385211,0.00004574149,0.00004314832,0.001751629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5745535,"threshold_uncertainty_score":0.9999896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00806034663565508,"score_gpt":0.2743239786519059,"score_spread":0.2662636320162508,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}