{"id":"W2984981484","doi":"10.1002/ijc.32771","title":"Transcriptome‐wide association study reveals candidate causal genes for lung cancer","year":2019,"lang":"en","type":"article","venue":"International Journal of Cancer","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sinai Health System; Lunenfeld-Tanenbaum Research Institute; St. Paul's Hospital; University of British Columbia; BC Cancer Agency; Princess Margaret Cancer Centre; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Université Laval; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; National Cancer Institute; National Institutes of Health; Institut National Du Cancer; National Institute of Allergy and Infectious Diseases; Cancer Prevention and Research Institute of Texas; World Health Organization; W. M. Keck Foundation","keywords":"Transcriptome; Lung cancer; Gene; Biology; Candidate gene; Computational biology; Association (psychology); Genetics; Medicine; Bioinformatics; Oncology; Gene expression; Psychology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008580274,0.000237212,0.0005942072,0.0006091499,0.0003227837,0.0006546792,0.0002055457,0.0003433447,0.002075341],"category_scores_gemma":[0.001630921,0.0002089128,0.0007077263,0.001229029,0.0002778317,0.0001623435,0.0004254669,0.0004781737,0.0002640024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001663402,"about_ca_system_score_gemma":0.000264185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001444267,"about_ca_topic_score_gemma":0.002556929,"domain_scores_codex":[0.9994578,0.0001440249,0.00004038235,0.0001913291,0.00009963038,0.00006690653],"domain_scores_gemma":[0.999027,0.0003994065,0.0002275665,0.0001580121,0.00007349759,0.0001145497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001314693,0.00008068286,0.8518332,0.0001952858,0.002235345,0.001168227,0.0002490662,0.0008835865,0.124153,0.0004361532,0.001322845,0.01612786],"study_design_scores_gemma":[0.0000327936,0.00005655822,0.9947041,0.00000774299,0.0004021062,0.0003765012,0.00005847177,0.001004228,0.001968643,0.0003000316,0.001079975,0.000008831951],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928275,0.001257613,0.003181961,0.0002109742,0.00002647583,0.00001010486,0.001792502,0.0001061652,0.0005867071],"genre_scores_gemma":[0.9966108,0.0004865535,0.00114198,0.00008974377,0.00002211287,0.00001119267,0.001305876,0.0000237543,0.0003079999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002075341,"threshold_uncertainty_score":0.006942689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01064834360893573,"score_gpt":0.3456260816634661,"score_spread":0.3349777380545303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}