{"id":"W2984981484","doi":"10.1002/ijc.32771","title":"Transcriptome‐wide association study reveals candidate causal genes for lung cancer","year":2019,"lang":"en","type":"article","venue":"International Journal of Cancer","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sinai Health System; Lunenfeld-Tanenbaum Research Institute; St. Paul's Hospital; University of British Columbia; BC Cancer Agency; Princess Margaret Cancer Centre; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Université Laval; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; National Cancer Institute; National Institutes of Health; Institut National Du Cancer; National Institute of Allergy and Infectious Diseases; Cancer Prevention and Research Institute of Texas; World Health Organization; W. M. Keck Foundation","keywords":"Transcriptome; Lung cancer; Gene; Biology; Candidate gene; Computational biology; Association (psychology); Genetics; Medicine; Bioinformatics; Oncology; Gene expression; Psychology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005952027,0.0001038368,0.0002199009,0.00007072673,0.00003282591,0.00002439768,0.0002589243,0.0001037445,0.0001365198],"category_scores_gemma":[0.000220869,0.000092112,0.000152539,0.00003954625,0.000008943001,0.00000996998,0.00002576451,0.00008586135,0.00000154756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002457673,"about_ca_system_score_gemma":0.0002128324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000207368,"about_ca_topic_score_gemma":0.0004774235,"domain_scores_codex":[0.9988672,0.00008049198,0.0004388269,0.0001578344,0.0002782902,0.0001773704],"domain_scores_gemma":[0.9982842,0.00008612739,0.0005813992,0.00008740705,0.0009099956,0.00005086141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001844406,0.00006506284,0.944674,0.000005422675,0.001186187,0.000001036224,0.000110351,0.003322816,0.03158314,0.00001673609,0.01716792,0.001682874],"study_design_scores_gemma":[0.004665689,0.0005992674,0.8897169,0.00006854426,0.0003252117,0.000005972142,0.0002752953,0.0003953057,0.005489561,0.0001416883,0.09802792,0.000288681],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872788,0.004975355,0.001365927,0.002957669,0.002928462,0.0002731162,0.0001412656,0.000002480346,0.00007694048],"genre_scores_gemma":[0.9937837,0.001713213,0.0002769735,0.0009897168,0.001153662,0.00005784492,0.00002353623,0.00001599923,0.001985368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08086,"threshold_uncertainty_score":0.3756219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01064834360893573,"score_gpt":0.3456260816634661,"score_spread":0.3349777380545303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}