{"id":"W2985056677","doi":"10.1101/834937","title":"Comparative genomic analyses and a novel linkage map for cisco ( <i>Coregonus artedi</i> ) provide insights into chromosomal evolution and rediploidization across salmonids","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"U.S. Fish and Wildlife Service; Old Dominion University; U.S. Geological Survey; Cisco Systems","keywords":"Biology; Coregonus; Tetrasomy; Evolutionary biology; Genetics; Genome; Synteny; Genome evolution; Ploidy; Chromosome; Karyotype; Gene; Fish <Actinopterygii>; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007997849,0.0002013055,0.0001483912,0.001240666,0.0003109604,0.0001688219,0.000187566,0.0002397456,0.001330568],"category_scores_gemma":[0.0001606391,0.0001450621,0.0002787186,0.0005919969,0.0001652587,0.0001261563,0.0004423058,0.0003668811,0.0002713763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002272684,"about_ca_system_score_gemma":0.0002661486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003786069,"about_ca_topic_score_gemma":0.007697137,"domain_scores_codex":[0.999931,0.000004444889,0.000004129884,0.00003426537,0.00001450989,0.00001154818],"domain_scores_gemma":[0.9998236,0.00003040757,0.000057044,0.0000148115,0.00003348733,0.00004055961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001140492,0.00001965592,0.01862758,0.00005159546,0.00001746655,0.0001454652,0.0001715732,0.0001372893,0.9713238,0.0002182042,0.00005800758,0.009115266],"study_design_scores_gemma":[0.00004354414,0.000224831,0.9134077,0.00004645623,0.00009943988,0.00185328,0.0005020272,0.002767198,0.070265,0.0004743586,0.01029117,0.00002481504],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931954,0.0002335137,0.004215753,0.0000303014,0.000005328401,0.00002239484,0.0007520866,0.00004570892,0.001499458],"genre_scores_gemma":[0.9880579,0.0001536967,0.007909793,0.00003214049,0.000004972288,0.00003781244,0.002541978,0.00002034043,0.001241519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003786069,"threshold_uncertainty_score":0.007528067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03179566571160563,"score_gpt":0.260887885174431,"score_spread":0.2290922194628254,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}