{"id":"W2985597735","doi":"10.1186/s12864-019-6226-8","title":"Analysis of five deep-sequenced trio-genomes of the Peninsular Malaysia Orang Asli and North Borneo populations","year":2019,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Forensic and Genetic Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Faculty of Medicine and Health, University of Sydney; National Science Fund for Distinguished Young Scholars; Youth Innovation Promotion Association; Monash University Malaysia; Universiti Malaysia Sabah; National Key Research and Development Program of China; National Research Foundation; National University of Singapore; Universiti Teknologi MARA; Kementerian Sains, Teknologi dan Inovasi; University of Toronto; Ministério da Ciência, Tecnologia e Inovação; Hospital for Sick Children; Science and Technology Commission of Shanghai Municipality; Ulsan National Institute of Science and Technology; Chinese Academy of Sciences; National Natural Science Foundation of China; Monash University","keywords":"Indel; Copy-number variation; Biology; 1000 Genomes Project; Genetics; Genome; Haplotype; Population; Evolutionary biology; Genomics; Single-nucleotide polymorphism; Gene; Allele; Genotype; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117899,0.00008865353,0.0002058333,0.00006178411,0.00003773672,0.000007860737,0.0002022919,0.00007420591,0.00002558815],"category_scores_gemma":[0.00003863694,0.00006858719,0.0001547607,0.0002909265,0.0001316612,0.000001821389,0.0001440407,0.00004683552,0.00000221872],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001022338,"about_ca_system_score_gemma":0.0001048636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001188162,"about_ca_topic_score_gemma":0.0006286314,"domain_scores_codex":[0.999253,0.00005132385,0.0002255896,0.0002125634,0.0001182493,0.0001392781],"domain_scores_gemma":[0.9992526,0.0000147772,0.0001238578,0.0004603416,0.0001079792,0.00004042327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007732629,0.00002445821,0.7754787,0.00003602536,0.0003533378,2.492997e-7,0.000283949,0.0405306,0.1822577,0.000149373,0.00002925112,0.0007790088],"study_design_scores_gemma":[0.000629826,0.0001405872,0.9480616,0.000004403124,0.0003397455,0.00000243456,0.0004035615,0.01412201,0.03538903,0.0001082204,0.0006475741,0.0001509345],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980482,0.001042766,0.0003580881,0.00002284157,0.00003821667,0.0002239088,0.0000660182,0.000001358138,0.0001985867],"genre_scores_gemma":[0.9973859,0.0001973982,0.0016937,0.00001850038,0.00001904105,0.000004013529,0.0001158086,0.000009332267,0.0005563709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.172583,"threshold_uncertainty_score":0.2796904,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01950872921266329,"score_gpt":0.2607601739279469,"score_spread":0.2412514447152836,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}