{"id":"W2985948685","doi":"10.1093/nar/gkz996","title":"Plant Reactome: a knowledgebase and resource for comparative pathway analysis","year":2019,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Strong; National Institute of Food and Agriculture; Cold Spring Harbor Laboratory; Oregon State University; European Bioinformatics Institute; National Institutes of Health; Ontario Institute for Cancer Research; National Science Foundation","keywords":"Biology; Computational biology; Resource (disambiguation); Genetics; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002583135,0.002601778,0.002925919,0.01183076,0.002037411,0.003706083,0.004452937,0.001909995,0.03411248],"category_scores_gemma":[0.006228962,0.001678601,0.002963633,0.01186951,0.0005669519,0.003767135,0.00437955,0.003060538,0.0232057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001318351,"about_ca_system_score_gemma":0.004815574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005045398,"about_ca_topic_score_gemma":0.007436206,"domain_scores_codex":[0.99855,0.0002525978,0.0002214214,0.0004738362,0.0003792289,0.0001228645],"domain_scores_gemma":[0.9976666,0.0006832653,0.0002785389,0.000682478,0.0004477546,0.0002414062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002164984,0.0004642287,0.004341921,0.01934731,0.001797442,0.001801014,0.001038546,0.01268716,0.07883458,0.05009187,0.6400613,0.1873697],"study_design_scores_gemma":[0.0002884248,0.0001038483,0.004484629,0.001239254,0.000586779,0.001043967,0.0002432054,0.009344916,0.01677355,0.02648518,0.9392029,0.0002033528],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.00571539,0.003974007,0.1623581,0.0005013795,0.0003172458,0.0007143253,0.7403224,0.06753281,0.01856455],"genre_scores_gemma":[0.01018504,0.002488842,0.1508944,0.0002140148,0.00004850012,0.0009898266,0.8274482,0.005104987,0.002626186],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03411248,"threshold_uncertainty_score":0.1141176,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04640526486031038,"score_gpt":0.3299035497327956,"score_spread":0.2834982848724852,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}