{"id":"W2986096023","doi":"10.7554/elife.42535.032","title":"Author response: An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins","year":2019,"lang":"en","type":"peer-review","venue":"","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"","keywords":"Alphaproteobacteria; Biology; Phylogenetics; Gammaproteobacteria; Taxon; Evolutionary biology; Rickettsiales; Gene; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003345397,0.00146681,0.001426797,0.001362523,0.002391886,0.003701335,0.001777828,0.008642225,0.3259842],"category_scores_gemma":[0.0304053,0.0008443591,0.00118765,0.001137545,0.001478062,0.002701581,0.004040924,0.006755591,0.1502682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001930564,"about_ca_system_score_gemma":0.003719568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002384586,"about_ca_topic_score_gemma":0.004834418,"domain_scores_codex":[0.9964037,0.0007637771,0.0002695351,0.0006417929,0.001365066,0.0005561832],"domain_scores_gemma":[0.9885698,0.002890415,0.0008738522,0.0008417278,0.004998705,0.001825462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001018352,0.000006567634,0.0001884509,0.0001362363,0.000009021511,0.00008221543,0.00004320565,0.00004714054,0.0001884857,0.0003265387,0.9922524,0.006617949],"study_design_scores_gemma":[0.0001097856,0.00004189095,0.000855448,0.0003908364,0.00001997068,0.0001992361,0.0005265115,0.0001534592,0.0006010296,0.001876876,0.995169,0.00005600072],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.002617179,0.003780271,0.006429201,0.4689726,0.4340411,0.0003454639,0.02010138,0.005764951,0.05794789],"genre_scores_gemma":[0.02422471,0.007168056,0.01264573,0.4338445,0.0966443,0.0009335739,0.02003685,0.004998896,0.3995033],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.3259842,"threshold_uncertainty_score":0.9614017,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04477203102425838,"score_gpt":0.3191631149519196,"score_spread":0.2743910839276612,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}