{"id":"W2986181455","doi":"10.1111/1462-2920.14833","title":"ICETh1 and ICETh2, two interdependent mobile genetic elements in <i>Thermus thermophilus</i> transjugation","year":2019,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Centro de Biología Molecular Severo Ochoa; Ministerio de Ciencia, Innovación y Universidades; Fundación Ramón Areces","keywords":"Thermus thermophilus; Biology; Mobile genetic elements; Genetics; Horizontal gene transfer; Computational biology; DNA; Gene; Genome; Escherichia coli; Plasmid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001060488,0.0001541637,0.0001267289,0.00003718151,0.0000195939,0.000006569594,0.0001124671,0.00009586443,0.0001644276],"category_scores_gemma":[0.00000133103,0.0001576843,0.0000410193,0.00002052514,0.00005755459,0.000002644157,0.0001028448,0.00009143254,0.00005167066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002589917,"about_ca_system_score_gemma":0.00000437143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000102253,"about_ca_topic_score_gemma":0.00003164835,"domain_scores_codex":[0.9991104,0.00006851344,0.0002078489,0.0003589453,0.0000292906,0.000224981],"domain_scores_gemma":[0.9997186,0.000006805857,0.00003841584,0.0001966803,0.000001542239,0.00003794456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002899954,0.0000485516,0.02658471,0.00000845548,0.00001915061,0.000002394503,0.0001356182,0.0006524457,0.9666023,0.000001126135,0.00001774758,0.005898505],"study_design_scores_gemma":[0.003930409,0.0008402366,0.1117948,0.00002464121,0.00002337357,0.0001922183,0.0004325948,0.0001972725,0.8571543,0.00003558729,0.02481277,0.0005618723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968801,0.001727864,0.0005827312,0.00002242969,0.0001473124,0.0003464483,0.00004155075,0.000006062342,0.0002454953],"genre_scores_gemma":[0.9986102,0.000337539,0.0003987921,0.0001759213,0.0000542892,0.0000279928,0.0001870571,0.00002390302,0.0001843072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1094481,"threshold_uncertainty_score":0.6430181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00157971451349584,"score_gpt":0.2238810534585896,"score_spread":0.2223013389450938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}