{"id":"W2987388287","doi":"10.1101/830695","title":"Reanalysis of Alzheimer’s Brain Sequencing Data Reveals Absence of Purported HHV6A and HHV7","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Shotgun sequencing; Smallpox; Variola virus; Shotgun; Disease; Computational biology; Biology; Virology; DNA sequencing; Medicine; Genetics; Internal medicine; Gene; Vaccination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00193371,0.0008924433,0.0006383036,0.003354274,0.001192578,0.001631365,0.0006718267,0.0005529101,0.004969068],"category_scores_gemma":[0.003599847,0.0002959224,0.001022567,0.002162463,0.0004982561,0.0004828589,0.0009186972,0.001180533,0.005362876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004664784,"about_ca_system_score_gemma":0.001045717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007893538,"about_ca_topic_score_gemma":0.0139745,"domain_scores_codex":[0.9990717,0.00008948499,0.00007868838,0.0003081774,0.0003119516,0.000139945],"domain_scores_gemma":[0.9979753,0.000411347,0.0001220638,0.0004140991,0.0009354438,0.0001417405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003233679,0.0004536357,0.2314841,0.001894399,0.002213631,0.001790833,0.002399274,0.003235979,0.4060134,0.001773574,0.1402613,0.2052462],"study_design_scores_gemma":[0.000221255,0.0005306219,0.5299633,0.000491666,0.001201394,0.002249343,0.003437379,0.02582707,0.184774,0.006131626,0.2449799,0.0001924331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8022494,0.003511489,0.01940402,0.00183623,0.001266519,0.0001919622,0.1559093,0.007067224,0.008563779],"genre_scores_gemma":[0.6388459,0.001290017,0.05554111,0.0009863052,0.0002232993,0.0002673601,0.2914465,0.00305631,0.008343172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007893538,"threshold_uncertainty_score":0.01662314,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04835674042127094,"score_gpt":0.2771905924506968,"score_spread":0.2288338520294259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}