{"id":"W2987480794","doi":"10.1101/822551","title":"Simultaneous quantification of <i>Vibrio metoecus</i> and <i>Vibrio cholerae</i> with its O1 serogroup and toxigenic subpopulations in environmental reservoirs","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Faculty of Graduate Studies and Research, University of Alberta; Canadian Institute for Advanced Research; Directorate for Biological Sciences; Alberta Innovates; University of Alberta; Natural Sciences and Engineering Research Council of Canada","keywords":"Vibrio cholerae; Biology; Cholera; Cholera toxin; Vibrio; Population; Microbiology; El Tor; Vibrionaceae; Gene; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005347346,0.0006634181,0.0004279905,0.0006996725,0.0002201613,0.0005957953,0.000316224,0.0004923135,0.0005576743],"category_scores_gemma":[0.0007384334,0.0002706107,0.0003124868,0.0005446334,0.0002894146,0.0002532993,0.0004588372,0.0003401614,0.000285741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003233147,"about_ca_system_score_gemma":0.0003477192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001732565,"about_ca_topic_score_gemma":0.002422859,"domain_scores_codex":[0.9992268,0.0001218187,0.00004292598,0.0002569382,0.0002386546,0.0001128484],"domain_scores_gemma":[0.9995546,0.00009840746,0.0001201343,0.00002307275,0.0001633625,0.00004039994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005365641,0.00002979013,0.005584769,0.00008730934,0.00001334853,0.00001290479,0.00008010267,0.0003302715,0.9910284,0.00004726878,0.00005168248,0.002680605],"study_design_scores_gemma":[0.00001221801,0.0005127863,0.05679715,0.00007333988,0.00007752259,0.0001563375,0.0003600953,0.01062397,0.9270855,0.0001566507,0.00409925,0.00004516289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.959065,0.001282374,0.03444904,0.00009282623,0.00004500747,0.0001681312,0.002738776,0.0003429794,0.001815778],"genre_scores_gemma":[0.9475436,0.0007259863,0.04503616,0.0001197033,0.00002220552,0.0003953759,0.002877068,0.00006213086,0.003217795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001732565,"threshold_uncertainty_score":0.003445029,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01150737799266843,"score_gpt":0.2258047265967328,"score_spread":0.2142973486040644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}