{"id":"W2987551746","doi":"10.1093/ofid/ofz476","title":"Clinical Outcomes Associated With Escherichia coli Infections in Adults With Cystic Fibrosis: A Cohort Study","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Gilead Sciences","keywords":"Medicine; Cystic fibrosis; Cohort; Escherichia coli; Pathogenic organism; Cohort study; Internal medicine; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004759961,0.0003739891,0.001101026,0.0002407022,0.0001940382,0.0002095375,0.0002844361,0.0001007286,0.0003598038],"category_scores_gemma":[0.001947662,0.0002586911,0.0001414283,0.001075725,0.0002042843,0.0005356436,0.0002912862,0.0004824037,0.0001666654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000349125,"about_ca_system_score_gemma":0.0006657331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002130297,"about_ca_topic_score_gemma":0.01294337,"domain_scores_codex":[0.996831,0.0003524195,0.0006096388,0.0007981166,0.0007300058,0.0006788182],"domain_scores_gemma":[0.9971769,0.001070296,0.0002494101,0.0007322434,0.0003185503,0.0004526321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002990535,0.008065303,0.9869748,0.00007883061,0.000786568,0.00009570645,0.00007369983,0.0001686328,0.000007161514,0.00003418989,0.0003946132,0.0003299861],"study_design_scores_gemma":[0.01610046,0.01335897,0.9675723,0.0009484825,0.0003940318,0.00001911799,0.0008190609,0.0001803201,0.000002273306,0.00005867743,0.0001978015,0.0003485076],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858308,0.0000709775,0.0000339386,0.0001564266,0.0001418779,0.008001959,0.00008442833,0.0001945935,0.005485034],"genre_scores_gemma":[0.9970747,0.00001805675,0.0001270198,0.0002808359,0.00002377809,0.001356657,0.0001250139,0.00007522754,0.0009187755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01940248,"threshold_uncertainty_score":0.9999865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01069469655939601,"score_gpt":0.3298550584331269,"score_spread":0.3191603618737309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}