{"id":"W2988061982","doi":"10.1093/femspd/ftz054","title":"Mapping of <i>Shigella flexneri</i>’s tissue distribution and type III secretion apparatus activity during infection of the large intestine of guinea pigs","year":2019,"lang":"en","type":"article","venue":"Pathogens and Disease","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"European Research Council; Canadian Institutes of Health Research; Agence Nationale de la Recherche; Howard Hughes Medical Institute","keywords":"Shigella flexneri; Secretion; Lamina propria; Microbiology; Biology; Mucus; Shigella; Bacteria; Vacuole; Intracellular; Extracellular; Intestinal mucosa; Intracellular parasite; Cell biology; Epithelium; Cytoplasm; Escherichia coli; Biochemistry; Salmonella; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001181969,0.0002656289,0.0001359578,0.0002189071,0.00009679098,0.0001924867,0.0001073198,0.0003248788,0.0004995791],"category_scores_gemma":[0.00007937415,0.0001559629,0.0002240187,0.0001206411,0.0002341952,0.0001502645,0.0001456422,0.0003320739,0.0002951616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001582831,"about_ca_system_score_gemma":0.0001193725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007687071,"about_ca_topic_score_gemma":0.0007482119,"domain_scores_codex":[0.9999329,0.000009875562,0.000003034153,0.00002186937,0.000008850961,0.00002350833],"domain_scores_gemma":[0.9999056,0.00001935296,0.00003172056,0.000008102296,0.00001111529,0.00002418569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004998912,0.000005390809,0.0002716585,0.00001022439,9.183636e-7,0.00002139427,0.00001231793,0.00001130047,0.9994056,0.000009464612,0.000004344283,0.0001972456],"study_design_scores_gemma":[0.00001069007,0.0009878504,0.09955262,0.00001653118,0.00002270501,0.0005916047,0.0002408623,0.0007993188,0.8964518,0.00005510756,0.001257472,0.00001343091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954021,0.0006435504,0.002625669,0.00004147,0.00000865592,0.00002216962,0.0003244321,0.00003816346,0.0008937641],"genre_scores_gemma":[0.9943071,0.0006153269,0.003167424,0.00004889655,0.000006060512,0.00004791647,0.0003869472,0.00002002102,0.001400347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007687071,"threshold_uncertainty_score":0.001671255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008308090238354016,"score_gpt":0.251702131269466,"score_spread":0.243394041031112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}