{"id":"W2988248097","doi":"10.1101/835561","title":"The Genome of the Charophyte Alga <i>Penium margaritaceum</i> Bears Footprints of the Evolutionary Origins of Land Plants","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Biocrusts and Microbial Ecology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Basic Energy Sciences; Cornell Atkinson Center for Sustainability, Cornell University; David R. Atkinson Center for a Sustainable Future , Cornell University; U.S. Department of Energy","keywords":"Biology; Desiccation; Plant evolution; Lineage (genetic); Neofunctionalization; Genome; Ecology; Evolutionary biology; Niche construction; Convergent evolution; Body plan; Habitat; Physcomitrella patens; Phylogenetics; Desiccation tolerance; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008561786,0.0003071838,0.0002126042,0.0004734222,0.0003785112,0.0003931013,0.0002100665,0.0003274647,0.001353516],"category_scores_gemma":[0.0001774601,0.0001487258,0.0003350913,0.0008531758,0.0001555657,0.0001968762,0.0003615671,0.0003656176,0.0005099032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002276314,"about_ca_system_score_gemma":0.00029295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002795389,"about_ca_topic_score_gemma":0.003095135,"domain_scores_codex":[0.9999341,0.000004753591,0.00000285695,0.00003027845,0.00001622831,0.00001175599],"domain_scores_gemma":[0.9998161,0.0000312306,0.00006634377,0.00002677574,0.0000233683,0.000036166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002262696,0.00001471201,0.007922883,0.0002631666,0.00005467939,0.0002300916,0.0001536598,0.0003232981,0.9791315,0.0002503642,0.0005312865,0.01089809],"study_design_scores_gemma":[0.00003271364,0.0002611901,0.7803133,0.0001157134,0.0002720134,0.002103068,0.0006565627,0.003019697,0.1583291,0.0006940563,0.05414976,0.00005278936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795501,0.00174181,0.003443753,0.0001408428,0.00004206828,0.00001607959,0.01183184,0.0004910028,0.002742622],"genre_scores_gemma":[0.968452,0.0007628164,0.006045105,0.0001958757,0.00002769807,0.00002278563,0.02193704,0.0001125639,0.002444138],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002795389,"threshold_uncertainty_score":0.005558252,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009454647052340007,"score_gpt":0.1759927360719755,"score_spread":0.1665380890196355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}