{"id":"W2988248097","doi":"10.1101/835561","title":"The Genome of the Charophyte Alga <i>Penium margaritaceum</i> Bears Footprints of the Evolutionary Origins of Land Plants","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Biocrusts and Microbial Ecology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Basic Energy Sciences; Cornell Atkinson Center for Sustainability, Cornell University; David R. Atkinson Center for a Sustainable Future , Cornell University; U.S. Department of Energy","keywords":"Biology; Desiccation; Plant evolution; Lineage (genetic); Neofunctionalization; Genome; Ecology; Evolutionary biology; Niche construction; Convergent evolution; Body plan; Habitat; Physcomitrella patens; Phylogenetics; Desiccation tolerance; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004565061,0.0002912435,0.0004815316,0.00001838982,0.0002489814,0.00002869161,0.001583109,0.0004237377,0.00005015528],"category_scores_gemma":[0.00008814066,0.00009534761,0.0002794009,0.0003805681,0.0004728133,0.00003526989,0.001244175,0.0005083592,0.000009965197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001160462,"about_ca_system_score_gemma":0.0002488493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006738717,"about_ca_topic_score_gemma":0.0001614185,"domain_scores_codex":[0.9980786,0.0002171888,0.0005586964,0.0004508084,0.0003096361,0.0003851076],"domain_scores_gemma":[0.9979337,0.0001695358,0.0008758159,0.000590465,0.0003665257,0.00006393648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004560111,0.0000941018,0.04425035,0.00009074393,0.00008888342,6.316957e-7,0.00000567063,0.00003491093,0.9545216,0.0006571945,0.0002016058,0.000008716818],"study_design_scores_gemma":[0.0001531285,0.00005790884,0.8283808,0.0001291596,0.00004202382,4.020526e-8,0.000004850711,0.00001023943,0.1396002,0.000005575421,0.03143475,0.000181328],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994613,0.001084029,0.000001049863,0.0007471053,0.001613403,0.0008168577,0.001073308,0.00002050779,0.00003074886],"genre_scores_gemma":[0.9990125,0.0005821608,0.00004259554,0.0001051712,0.0001965572,0.00002491705,5.701415e-7,0.000006262446,0.00002922439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8149213,"threshold_uncertainty_score":0.3888163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009454647052340007,"score_gpt":0.1759927360719755,"score_spread":0.1665380890196355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}