{"id":"W2988328755","doi":"10.1101/19011999","title":"Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma","year":2019,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Genome-wide association study; Lymphoma; Population; Biology; Genetic association; Chemokine; Immunology; Transcription factor; Human immunodeficiency virus (HIV); Viral load; Genetics; Virology; Medicine; Genotype; Single-nucleotide polymorphism; Gene; Inflammation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002017113,0.0002002978,0.0002141653,0.0004143653,0.0001900096,0.0003340861,0.0001483801,0.000273393,0.007308051],"category_scores_gemma":[0.0006941123,0.0000938339,0.000217047,0.0005445093,0.0001391512,0.00009268821,0.0001941322,0.0002162855,0.000419893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007913692,"about_ca_system_score_gemma":0.00006683484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001019083,"about_ca_topic_score_gemma":0.0006147557,"domain_scores_codex":[0.9999034,0.00003531621,0.000008002846,0.00002765089,0.00001376555,0.00001191165],"domain_scores_gemma":[0.9997417,0.0001061002,0.00006617681,0.00002377263,0.00001706303,0.00004521668],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003000957,0.0001221039,0.9471655,0.0001651748,0.0009545663,0.001129241,0.0002027953,0.0004853801,0.02358437,0.0005885835,0.002777896,0.01982346],"study_design_scores_gemma":[0.0001604658,0.0001825641,0.9896972,0.0000399395,0.0003623556,0.002120739,0.0001274982,0.001464271,0.002098047,0.0009296053,0.002807051,0.00001028633],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962162,0.001029326,0.0006449932,0.0002418983,0.00003509479,0.000005263031,0.0008662513,0.00003854294,0.0009223809],"genre_scores_gemma":[0.9978091,0.0002090112,0.0002579726,0.00004766824,0.00003773541,0.000004825726,0.0004412935,0.000009077406,0.001183251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007308051,"threshold_uncertainty_score":0.0244478,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01024328803347295,"score_gpt":0.2481015604475085,"score_spread":0.2378582724140355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}