{"id":"W2988716711","doi":"10.1128/mra.01282-19","title":"Analysis of the Complete Genome Sequence of the Widely Studied Strain Bradyrhizobium betae PL7HG1 <sup>T</sup> Reveals the Presence of Photosynthesis Genes and a Putative Plasmid","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Genome; Biology; Gene; Plasmid; Whole genome sequencing; Genetics; Bradyrhizobium; Chromosome; Nitrogen fixation; Strain (injury); Bacteria; Rhizobium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001021117,0.0006576086,0.0004507234,0.0006481221,0.0002727747,0.0003549808,0.0002551845,0.0003431573,0.001520071],"category_scores_gemma":[0.0002907548,0.0001803428,0.0004130034,0.0008264864,0.0001635938,0.0002185673,0.000327873,0.0007451227,0.001557515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001638309,"about_ca_system_score_gemma":0.0003993406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001390604,"about_ca_topic_score_gemma":0.001664027,"domain_scores_codex":[0.999905,0.00001043045,0.000006324663,0.00002766309,0.00002789029,0.00002270765],"domain_scores_gemma":[0.9996715,0.00008304133,0.00007133986,0.00003189871,0.0000530025,0.00008914219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003179816,0.00002598162,0.001252346,0.0001750186,0.00001820498,0.0001571747,0.0000589576,0.00006963724,0.9898244,0.00007006518,0.0001343054,0.007896031],"study_design_scores_gemma":[0.0001503067,0.001141218,0.1933951,0.0001739996,0.0005163073,0.004713161,0.0005793333,0.002273983,0.7502696,0.0006215057,0.04607548,0.00009000245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9510998,0.003883846,0.01431532,0.0003082139,0.00008692743,0.00008525919,0.02727946,0.00024823,0.002692857],"genre_scores_gemma":[0.7792438,0.004070024,0.02338433,0.0001761872,0.00006568889,0.0001059086,0.1882116,0.00024819,0.004494373],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001520071,"threshold_uncertainty_score":0.005085111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0230770372708517,"score_gpt":0.2209432344671916,"score_spread":0.1978661971963399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}