{"id":"W2988820761","doi":"10.1093/nar/gkz986","title":"oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species","year":2019,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research","keywords":"Biology; Transcriptome; RNA; Computational biology; Caenorhabditis elegans; RNA-binding protein; Genetics; Drosophila melanogaster; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001716293,0.00009882393,0.0001753755,0.0002207466,0.00005779684,0.00002394895,0.0005669156,0.00007658978,0.00009033117],"category_scores_gemma":[0.0002503187,0.00007088954,0.00007054995,0.0004117326,0.0002642189,0.00001434081,0.0001726456,0.0003107061,0.00001281391],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002280655,"about_ca_system_score_gemma":0.000154192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007693602,"about_ca_topic_score_gemma":0.00001924785,"domain_scores_codex":[0.9980587,0.0003020545,0.0002348812,0.0002699367,0.0007130307,0.0004213534],"domain_scores_gemma":[0.999218,0.00006050743,0.00004823814,0.0004275079,0.0001896734,0.00005611548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002451349,0.0001082504,0.004580053,0.0001492161,0.00002629295,0.000003883201,0.0007416058,0.0001429827,0.992986,0.0005488985,0.0002600534,0.0002076934],"study_design_scores_gemma":[0.0006387644,0.0004973958,0.0007701354,0.00006960188,0.000001847756,0.000001264642,0.002709944,0.005672051,0.9890381,0.0001928241,0.0003253363,0.00008275962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953279,0.0002805451,0.0002419574,0.0002776434,0.000006790442,0.000665276,0.0001263942,0.000002292011,0.003071188],"genre_scores_gemma":[0.9948855,0.0001247401,0.00125589,0.00001323117,0.00002111523,0.00004065703,0.00008550182,0.00001586325,0.0035575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005529068,"threshold_uncertainty_score":0.2890791,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0567065106842904,"score_gpt":0.3465371342884791,"score_spread":0.2898306236041887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}