{"id":"W2989709337","doi":"10.1101/850446","title":"Extracellular DNA controls expression of <i>Pseudomonas aeruginosa</i> genes involved in nutrient utilization, metal homeostasis, acid pH tolerance, and virulence","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Athabasca University; University of Calgary","funders":"","keywords":"Biofilm; Biology; Gene; Virulence; Extracellular; Pseudomonas aeruginosa; Transcriptome; Microbiology; Extracellular polymeric substance; DNA; Bacteria; Cell biology; Gene expression; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000687853,0.0003540217,0.0002381442,0.0002963484,0.0001642244,0.0004583668,0.000119026,0.0002606033,0.001411382],"category_scores_gemma":[0.0001960185,0.0001536714,0.000228216,0.0002364393,0.0001751808,0.0002117965,0.0003709739,0.000454523,0.0004169631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003801689,"about_ca_system_score_gemma":0.0001850762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001647496,"about_ca_topic_score_gemma":0.001538855,"domain_scores_codex":[0.9997897,0.00001748867,0.00001003105,0.00008199453,0.00005422005,0.00004662761],"domain_scores_gemma":[0.9998255,0.00002865985,0.00007004432,0.00001024201,0.0000349408,0.00003056673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002630826,0.00000663788,0.0004528353,0.00002562874,0.000001495863,0.00001560648,0.000009704823,0.00001718525,0.9988336,0.00001528963,0.00003280042,0.0005629095],"study_design_scores_gemma":[0.00001185161,0.0002476797,0.1468907,0.0000324318,0.00002987464,0.0002735787,0.0002600443,0.002128651,0.8460056,0.0001154111,0.003983215,0.00002100034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911691,0.001484234,0.002368682,0.0001686896,0.00003525066,0.00002673846,0.002573607,0.0001586833,0.00201501],"genre_scores_gemma":[0.9908198,0.0005156873,0.001707916,0.0001936419,0.00002089659,0.00004019892,0.002763574,0.00004661613,0.003891805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001647496,"threshold_uncertainty_score":0.004721522,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01290584929951078,"score_gpt":0.2138941958240609,"score_spread":0.2009883465245501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}