{"id":"W2990632541","doi":"10.2147/jir.s220960","title":"<p>PtpA and PknG Proteins Secreted by <em>Mycobacterium avium</em> subsp. <em>paratuberculosis</em> are Recognized by Sera from Patients with Rheumatoid Arthritis: A Case–Control Study</p>","year":2019,"lang":"en","type":"article","venue":"Journal of Inflammation Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Paratuberculosis; Immune system; Antibody; Virology; IRF5; Biology; Immunology; Microbiology; Mycobacterium; Medicine; Interferon regulatory factors; Bacteria; Genetics; Innate immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","scholarly_communication","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.008364312,0.001611141,0.003419553,0.002340824,0.001150477,0.00204992,0.001256099,0.001102627,0.003897756],"category_scores_gemma":[0.00548227,0.001345272,0.0006830331,0.002477486,0.0004465464,0.00256104,0.0006112843,0.003556958,0.0007626066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001252672,"about_ca_system_score_gemma":0.001621955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001573965,"about_ca_topic_score_gemma":0.002668422,"domain_scores_codex":[0.9783897,0.003837674,0.004096181,0.002009466,0.008512737,0.003154214],"domain_scores_gemma":[0.9809338,0.002381971,0.002539378,0.002000514,0.00907631,0.003068058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.03117017,0.004606911,0.1825514,0.001566125,0.00471072,0.005742545,0.00639283,0.0000532041,0.654757,0.0000476562,0.08382507,0.02457637],"study_design_scores_gemma":[0.1562262,0.02802071,0.6747643,0.01463968,0.001379138,0.003338578,0.006455999,0.004418033,0.03921686,0.0002863322,0.0660173,0.005236839],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775249,0.007048832,0.00009704973,0.002248757,0.0005938509,0.009463729,0.002246691,0.0001872076,0.0005890232],"genre_scores_gemma":[0.9886636,0.006032703,0.000591744,0.0002679947,0.001001497,0.001041293,0.001135673,0.0003176045,0.0009479314],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6155401,"threshold_uncertainty_score":0.9996637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01321919338671914,"score_gpt":0.2659869958709334,"score_spread":0.2527678024842143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}