{"id":"W2990889228","doi":"10.1128/jvi.01786-19","title":"Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4 <sup>+</sup> T Cell Subsets during Long-Term Combination Antiretroviral Therapy","year":2019,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; AIDS Vancouver; Western University; Simon Fraser University; Centre Hospitalier de l’Université de Montréal; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Michael Smith Health Research BC; Canada Research Chairs","keywords":"Biology; Genetic diversity; Phylogenetic tree; Cart; Antiretroviral therapy; Population; Human immunodeficiency virus (HIV); Virology; Evolutionary biology; Genome; Lentivirus; Genetics; Viral load; Gene; Viral disease; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002417052,0.0001248863,0.0002278429,0.0006567101,0.000404494,0.0005745315,0.0002147667,0.0003029356,0.0006000467],"category_scores_gemma":[0.0006651623,0.0001310332,0.000090997,0.0003863471,0.0002840366,0.0003251896,0.0003256317,0.0002461615,0.0001206179],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000198483,"about_ca_system_score_gemma":0.00008221013,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001385274,"about_ca_topic_score_gemma":0.00203001,"domain_scores_codex":[0.9998202,0.00004545779,0.00000993529,0.00005366774,0.00002529006,0.00004558637],"domain_scores_gemma":[0.9997339,0.00006602985,0.00007392603,0.00002851296,0.00005663545,0.00004111084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007206118,0.00006030812,0.8126406,0.00003052859,0.00005703262,0.0003613568,0.001814501,0.0005778956,0.1660247,0.000163604,0.00006683513,0.01748201],"study_design_scores_gemma":[0.00000458459,0.0002508,0.9869789,0.000008260096,0.00003619586,0.001041986,0.001155197,0.001500572,0.008466188,0.0001782945,0.0003675057,0.00001154273],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999562,0.00008848342,0.0001684321,0.000004648844,7.371929e-7,0.00000225395,0.00003152967,0.000001552109,0.0001403182],"genre_scores_gemma":[0.999651,0.00002733589,0.0001513351,0.000006411516,0.000001872885,0.000002849318,0.00003922765,0.000001559052,0.0001184631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001385274,"threshold_uncertainty_score":0.00275439,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01591523184002128,"score_gpt":0.2461614622586804,"score_spread":0.2302462304186592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}