{"id":"W2990971319","doi":"10.1093/gigascience/giz152","title":"A draft genome sequence of the elusive giant squid, <i>Architeuthis dux</i>","year":2020,"lang":"en","type":"article","venue":"GigaScience","topic":"Cephalopods and Marine Biology","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; Bioinformatics Solutions (Canada)","funders":"FP7 People: Marie-Curie Actions; European Regional Development Fund; Fundação para a Ciência e a Tecnologia; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Rede Nacional de Espectrometria de Massa; Novo Nordisk Fonden; H. Lundbeck A/S; Vedecká Grantová Agentúra MŠVVaŠ SR a SAV; Danish e-Infrastructure Cooperation; Novo Nordisk; Danmarks Grundforskningsfond; David and Lucile Packard Foundation; Deutsche Forschungsgemeinschaft; National Research Foundation; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust; European Molecular Biology Laboratory; National Science Foundation; Wellcome; Villum Fonden; Lundbeckfonden","keywords":"Squid; Computational biology; Genome; Evolutionary biology; Sequence (biology); Biology; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001678092,0.0001006527,0.0001414658,0.0000043523,0.0001882464,0.00002089447,0.0008628895,0.00004371022,0.0001915017],"category_scores_gemma":[0.0001179762,0.00003034226,0.00009975571,0.0006411858,0.000478832,0.00006907032,0.0004888389,0.0001081416,0.00003124932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000120161,"about_ca_system_score_gemma":0.00003463143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002767075,"about_ca_topic_score_gemma":0.0002193886,"domain_scores_codex":[0.9989796,0.00006393148,0.0001768274,0.0003207669,0.000189043,0.0002698201],"domain_scores_gemma":[0.9995575,0.0000834773,0.0001013185,0.00008113922,0.0000569051,0.0001196652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006628915,0.00001618382,0.0021006,0.000004402001,0.000001766215,0.000001982233,0.0003522924,0.000004713565,0.983213,0.0007786503,0.0001126946,0.01340707],"study_design_scores_gemma":[0.0002698503,0.001118226,0.5469125,0.00003610237,0.0000213397,0.00006075798,0.0008262349,0.0005507528,0.03733991,0.001252477,0.4110815,0.0005302934],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9819146,0.0001323621,0.00001546816,0.01493214,0.0001612034,0.000184028,0.00009196444,0.00003035789,0.002537913],"genre_scores_gemma":[0.9965,0.00003926675,0.000115504,0.002962179,0.0001317872,0.000005775627,0.000006844424,4.894286e-7,0.0002382216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9458731,"threshold_uncertainty_score":0.2096809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02936419815462609,"score_gpt":0.2076561284294966,"score_spread":0.1782919302748705,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}