{"id":"W2990972857","doi":"10.1128/jcm.01651-19","title":"Whole-Genome Sequencing of Corynebacterium diphtheriae Isolates Recovered from an Inner-City Population Demonstrates the Predominance of a Single Molecular Strain","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Corynebacterium diphtheriae; Whole genome sequencing; Biology; Population; Genome; Strain (injury); Corynebacterium; Microbiology; Genetics; Virology; Bacteria; Diphtheria; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009857276,0.0002025803,0.0007581073,0.00004395115,0.0000260965,0.00001736126,0.0004805711,0.0003882981,0.00007094909],"category_scores_gemma":[0.0004307457,0.0001467049,0.000361509,0.00008120621,0.000274141,0.00002485873,0.00009288509,0.0002563962,0.000002579892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002057171,"about_ca_system_score_gemma":0.0001754048,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005447591,"about_ca_topic_score_gemma":0.00004160883,"domain_scores_codex":[0.9972432,0.0005875535,0.001581287,0.0003036267,0.00005968324,0.0002246873],"domain_scores_gemma":[0.9970211,0.0001915785,0.001907572,0.0004573341,0.000345845,0.00007658076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009867735,0.0002146353,0.01526997,0.00002050253,0.0002224078,0.000004236162,0.00008046848,0.000092562,0.981611,0.000006771068,0.00000964862,0.001481056],"study_design_scores_gemma":[0.003549371,0.008787343,0.1040322,0.0002148386,0.0002156908,0.0002668637,0.000468514,0.00004018544,0.8752031,0.0009804773,0.005747858,0.0004935036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975196,0.000511441,0.0002632398,0.0001109326,0.0006685733,0.0001916326,0.0006653572,0.000003351089,0.00006590369],"genre_scores_gemma":[0.9980091,0.00008956719,0.001085442,0.0001539009,0.0002414122,0.000001255882,0.0003508998,0.00002300085,0.00004537242],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1064078,"threshold_uncertainty_score":0.598245,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02410017561874007,"score_gpt":0.2935538451234669,"score_spread":0.2694536695047269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}