{"id":"W2991518912","doi":"10.1016/j.jinf.2019.11.010","title":"Rare homologous recombination in H3N2 avian influenza A viruses","year":2019,"lang":"en","type":"letter","venue":"Journal of Infection","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Natural Science Foundation of China","keywords":"Reassortment; Homologous recombination; Biology; Recombination; Influenza A virus subtype H5N1; Genetics; Genome; Viral evolution; Virology; Gene; Virus; Coronavirus disease 2019 (COVID-19); Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004272879,0.0002360755,0.000459131,0.0001866183,0.0001386892,0.00007468482,0.0001463309,0.0006279137,0.0002640097],"category_scores_gemma":[0.0003182881,0.0001003581,0.0002854049,0.00050037,0.00004818762,0.0003571305,0.00005632443,0.001624751,0.0001234403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000344846,"about_ca_system_score_gemma":0.00002763074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007553606,"about_ca_topic_score_gemma":0.0009733842,"domain_scores_codex":[0.9983338,0.0002351855,0.0006686899,0.0002047111,0.0003049884,0.0002526908],"domain_scores_gemma":[0.9983265,0.0003431989,0.0009164546,0.00005239775,0.0003374996,0.00002399328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000093626,0.0002089521,0.3635412,0.00007654923,0.0001237131,0.0001796695,0.0001157879,0.00005215282,0.004772063,0.00001424874,0.6096099,0.02121213],"study_design_scores_gemma":[0.0002569513,0.001133679,0.3322761,0.0002010268,0.00004471895,0.0002733218,0.00002099386,0.000002926747,0.0002317139,0.0004705146,0.6648511,0.0002369344],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9555253,0.0003483135,0.000005189164,0.040227,0.001903659,0.0002578106,0.0000165011,0.00004010963,0.001676087],"genre_scores_gemma":[0.7029039,0.001052488,0.00005511302,0.2861504,0.008911797,0.00003141543,0.0000461824,0.00001027571,0.0008384899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2526214,"threshold_uncertainty_score":0.7058827,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04655941913604148,"score_gpt":0.2697937935550865,"score_spread":0.223234374419045,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}