{"id":"W2992191939","doi":"10.1128/jcm.01591-19","title":"Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. John’s Health Sciences Centre","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biology; 23S ribosomal RNA; Levofloxacin; Helicobacter pylori; Amoxicillin; Genetics; Antibiotic resistance; Microbiology; Genotype; Clarithromycin; Drug resistance; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003083516,0.0001970458,0.0002009024,0.0008598882,0.0002964459,0.0003789719,0.0001764335,0.0002122487,0.001748756],"category_scores_gemma":[0.0004413612,0.000190549,0.00009358039,0.0009414285,0.000262543,0.0002751141,0.0004313321,0.0003352942,0.0003031768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000353244,"about_ca_system_score_gemma":0.000622101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04463179,"about_ca_topic_score_gemma":0.1110978,"domain_scores_codex":[0.9998587,0.00002915187,0.00001488033,0.00003245347,0.00003667947,0.00002803182],"domain_scores_gemma":[0.9998211,0.00004036176,0.00004196334,0.0000120474,0.00003551533,0.00004903888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003344726,0.0001204948,0.8926371,0.0001519268,0.00008351517,0.001692144,0.001288347,0.0001206278,0.07476184,0.0001213372,0.00114069,0.02754746],"study_design_scores_gemma":[0.000006739743,0.00005345442,0.997109,0.00001663503,0.00001539267,0.0003972266,0.0004350653,0.00009484691,0.0005225393,0.00001032918,0.001336514,0.000002367667],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967152,0.0010391,0.0001892421,0.0001107944,0.000009631878,0.0000265826,0.0009875514,0.000004394647,0.0009174986],"genre_scores_gemma":[0.9906468,0.002927193,0.001323673,0.0001773279,0.00002361014,0.00007114981,0.002594902,0.00001840209,0.002216885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04463179,"threshold_uncertainty_score":0.08874398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06230669363736073,"score_gpt":0.3400013451691488,"score_spread":0.277694651531788,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}