{"id":"W2992628624","doi":"10.1038/s41396-019-0561-2","title":"Novel copper-containing membrane monooxygenases (CuMMOs) encoded by alkane-utilizing <i>Betaproteobacteria</i>","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Genome Alberta; National Research Foundation; Genome British Columbia; Syncrude; U.S. Department of Energy; Government of Alberta; Genome Canada; Joint Genome Institute; Mitacs; National Research Foundation of Korea","keywords":"Biology; Betaproteobacteria; Methane monooxygenase; Gene; Monooxygenase; Ammonia monooxygenase; Bacteria; Methanotroph; Operon; Gene cluster; Anaerobic oxidation of methane; Alkane; Microbiology; Biochemistry; Genetics; Archaea; Escherichia coli; Enzyme; Cytochrome P450","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007264264,0.0001900512,0.000201605,0.00002244207,0.0002830912,0.0001512773,0.0004922221,0.00008171651,0.006409789],"category_scores_gemma":[0.00003496528,0.0001207871,0.00009761111,0.0001508077,0.00009917464,0.0003190494,0.0001437986,0.0003538878,0.001583874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001343805,"about_ca_system_score_gemma":0.00002667667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000134108,"about_ca_topic_score_gemma":0.00004570326,"domain_scores_codex":[0.9985165,0.00008771928,0.000359579,0.0002246671,0.000406449,0.0004050714],"domain_scores_gemma":[0.9992655,0.00005920184,0.0002595089,0.0002409942,0.0000142399,0.0001605612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004978416,0.00004166561,0.004711412,0.000002492035,0.00001560353,0.000002066646,0.0003400884,0.00007988532,0.9850752,0.00000495147,0.008521723,0.001155149],"study_design_scores_gemma":[0.002187799,0.0002585837,0.009579005,0.00006796954,0.0000440167,0.0005411509,0.001004734,0.0007631506,0.9115088,0.00005587427,0.07342277,0.0005661715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921198,0.00005497657,0.0001000572,0.001547809,0.0004889866,0.0002475974,0.00003034509,0.00003075569,0.005379668],"genre_scores_gemma":[0.9962359,0.00009687983,0.0005323425,0.001713085,0.0001214702,0.000001578426,0.000008147735,0.00001871531,0.001271891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0735664,"threshold_uncertainty_score":0.9991935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01048085703003755,"score_gpt":0.2070314086211625,"score_spread":0.1965505515911249,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}