{"id":"W2993109130","doi":"10.1186/s12934-019-1260-4","title":"Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)","year":2019,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Science Foundation Ireland; Society of the Friendly Sons of St. Patrick for the Relief of Emigrants from Ireland","keywords":"Biology; Pichia pastoris; Genetic diversity; Yarrowia; Meiosis; Genetics; Homologous recombination; Ploidy; Yeast; Recombination; Genome; Saccharomyces cerevisiae; Pichia; Biotechnology; Gene; Population; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002647064,0.0002042421,0.0002295207,0.0008263076,0.0003333595,0.0004543924,0.0003185818,0.0002932806,0.0005998488],"category_scores_gemma":[0.0005583349,0.0001467212,0.0002363599,0.0007712558,0.0002376126,0.0002519997,0.0003637796,0.0003664133,0.0001264506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003271053,"about_ca_system_score_gemma":0.0001873337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001081785,"about_ca_topic_score_gemma":0.001476318,"domain_scores_codex":[0.9997041,0.00003648591,0.00004571873,0.0001150606,0.00005912078,0.00003945714],"domain_scores_gemma":[0.9994704,0.0001909094,0.0001632981,0.00005482425,0.00005902478,0.00006156289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001778178,0.00007539109,0.04211185,0.0001427476,0.00007238905,0.0001317072,0.0003823057,0.0002151458,0.9499495,0.0001356345,0.00006080157,0.00654471],"study_design_scores_gemma":[0.00003395513,0.0003950515,0.8162132,0.00004373592,0.0001555702,0.002305359,0.0006885248,0.001418072,0.1734308,0.0002813924,0.004992404,0.00004207359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973802,0.0002689746,0.001223255,0.0000138624,0.000001707233,0.00001277437,0.0007931596,0.0000141845,0.0002918987],"genre_scores_gemma":[0.9937751,0.0001854519,0.002259752,0.00002177725,0.000003808384,0.00002691541,0.003525972,0.0000130513,0.0001881004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001081785,"threshold_uncertainty_score":0.002373338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006039790823771228,"score_gpt":0.1891180639116422,"score_spread":0.183078273087871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}