{"id":"W2993109130","doi":"10.1186/s12934-019-1260-4","title":"Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)","year":2019,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Science Foundation Ireland; Society of the Friendly Sons of St. Patrick for the Relief of Emigrants from Ireland","keywords":"Biology; Pichia pastoris; Genetic diversity; Yarrowia; Meiosis; Genetics; Homologous recombination; Ploidy; Yeast; Recombination; Genome; Saccharomyces cerevisiae; Pichia; Biotechnology; Gene; Population; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007741372,0.0001186264,0.0001171623,0.00002822476,0.0002035777,0.00002076968,0.0002474947,0.000132606,0.00003339443],"category_scores_gemma":[0.00001466102,0.0000939099,0.00006321939,0.00007670865,0.0001441972,0.000005103102,0.0009730567,0.0001096237,0.00001129322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001769313,"about_ca_system_score_gemma":0.00003571447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001309203,"about_ca_topic_score_gemma":0.00005910377,"domain_scores_codex":[0.9993221,0.00005404967,0.0001199035,0.0002390345,0.00009079117,0.0001741533],"domain_scores_gemma":[0.9995525,0.000009262302,0.00007115735,0.0002487387,0.00007508924,0.00004325398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003245174,0.00002783139,0.1774088,0.00004390724,0.00001631084,1.155571e-7,0.000229669,0.00001135721,0.8218144,0.000005405167,0.000315303,0.00009455543],"study_design_scores_gemma":[0.0003485552,0.0001192725,0.1147963,0.000009123769,0.00001177613,0.000001399965,0.00007770718,0.00001403349,0.8810017,0.00001908911,0.003489533,0.0001115755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985749,0.0004073619,0.00001801638,0.00004079488,0.0004179177,0.0001997871,0.00004707398,0.000004953937,0.0002892222],"genre_scores_gemma":[0.9975166,0.0001618007,0.00004058702,0.00001470302,0.00006497919,8.00471e-7,0.00002609174,0.00001214276,0.002162254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06261246,"threshold_uncertainty_score":0.3829535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006039790823771228,"score_gpt":0.1891180639116422,"score_spread":0.183078273087871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}