{"id":"W2994722079","doi":"10.1158/1538-7445.panca19-b56","title":"Abstract B56: Endogenous retrovirus transcript levels are associated with immunogenic signatures in multiple metastatic cancer types","year":2019,"lang":"en","type":"article","venue":"Cancer Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Terry Fox Research Institute; Canada's Michael Smith Genome Sciences Centre; Spinal Cord Injury BC; Pancreas Centre (Canada)","funders":"","keywords":"Biology; Endogenous retrovirus; Pancreatic cancer; Cancer; Colorectal cancer; Cancer research; Metastatic breast cancer; Immunotherapy; Metastasis; Immunogenicity; Immunology; Breast cancer; Gene; Immune system; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001388621,0.0001356343,0.0001868125,0.0007320027,0.0001919614,0.0004435226,0.0001290325,0.0002991739,0.004779718],"category_scores_gemma":[0.0004129701,0.0001233386,0.000136457,0.0003995556,0.0002202531,0.0001434202,0.0002614205,0.0003215993,0.0006362958],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002013241,"about_ca_system_score_gemma":0.0000874683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003894342,"about_ca_topic_score_gemma":0.0004578472,"domain_scores_codex":[0.9998425,0.00001243071,0.00001723336,0.00005117484,0.00004518227,0.00003144611],"domain_scores_gemma":[0.999657,0.00005934186,0.0001264285,0.0000245654,0.0000450986,0.00008758983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001172818,0.00004739482,0.1236019,0.00007472112,0.00004006905,0.000447206,0.0001006172,0.0001012105,0.8680543,0.0001393063,0.0004165442,0.005803945],"study_design_scores_gemma":[0.0000223512,0.0003751475,0.906256,0.00001683571,0.00003860578,0.003713257,0.000256155,0.0005932156,0.08667479,0.0001866481,0.001852487,0.00001452809],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997946,0.0003039257,0.0004523882,0.00004222708,0.000008298924,0.000008371322,0.0006093831,0.00002871421,0.00060076],"genre_scores_gemma":[0.997433,0.0001482248,0.0005654868,0.0000276012,0.00001006538,0.00001557974,0.0006743947,0.00001399513,0.001111663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004779718,"threshold_uncertainty_score":0.01598978,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08248257307342638,"score_gpt":0.3367055651357753,"score_spread":0.2542229920623489,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}