{"id":"W2994844583","doi":"10.1101/2019.12.21.885921","title":"Ecological and evolutionary drivers of hemoplasma infection and bacterial genotype sharing in a Neotropical bat community","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"National Institute of Food and Agriculture; Defense Advanced Research Projects Agency; American Society of Mammalogists; Wellcome Trust; Division of Environmental Biology; Achievement Rewards for College Scientists Foundation; U.S. Department of Agriculture; Advanced Research Projects Agency; National Science Foundation","keywords":"Biology; Host (biology); Phylogenetic tree; Ecology; Genotype; Transmission (telecommunications); Biodiversity; Zoology; Phylogenetics; Pathogen; Phylogenetic diversity; Microbiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006163131,0.0001476177,0.0002098339,0.0008577523,0.0007400831,0.000645119,0.0003930484,0.0002772163,0.001110623],"category_scores_gemma":[0.0009516866,0.0001796355,0.0001648254,0.0006029265,0.0008352372,0.0006007545,0.0008915467,0.0003646749,0.00008875322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001004363,"about_ca_system_score_gemma":0.0005568519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04487494,"about_ca_topic_score_gemma":0.09373584,"domain_scores_codex":[0.9996945,0.00008215281,0.00001145971,0.0001165939,0.00002831289,0.00006700719],"domain_scores_gemma":[0.9992546,0.0001301708,0.0002748632,0.0000464435,0.0001177874,0.0001761008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000399938,0.00002470933,0.9928002,0.00001374412,0.0000354193,0.00008068282,0.001886628,0.0001916415,0.003028268,0.0001089695,0.00005879134,0.001730986],"study_design_scores_gemma":[5.465725e-7,0.00001143124,0.9984998,0.000003530504,0.000002995786,0.00004174287,0.0009929818,0.0003212244,0.00002007628,0.00003151194,0.00007254913,0.000001632323],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997652,0.00003589433,0.00004178111,0.0000184806,6.002976e-7,0.000001867037,0.00003111047,0.000001011927,0.0001040263],"genre_scores_gemma":[0.9998363,0.00002131748,0.00006858529,0.000006665831,9.072903e-7,0.000002023383,0.00003112446,5.833933e-7,0.00003234442],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04487494,"threshold_uncertainty_score":0.0892275,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02015905033841844,"score_gpt":0.2391064814518534,"score_spread":0.218947431113435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}