{"id":"W2995006437","doi":"10.1186/s13071-019-3848-2","title":"Genetic and antigenic variation of the bovine tick-borne pathogen Theileria parva in the Great Lakes region of Central Africa","year":2019,"lang":"en","type":"article","venue":"Parasites & Vectors","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Université de Namur; Agence Universitaire de la Francophonie; Biotechnology and Biological Sciences Research Council; International Livestock Research Institute; International Foundation for Science","keywords":"Theileria parva; East Coast fever; Biology; Tick; Genetic variation; Genetic diversity; Antigenic variation; Entomology; Genotype; Virology; Genetics; Zoology; Gene; Population; Parasite hosting","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001511708,0.0001538553,0.0002584313,0.00007156099,0.00005971993,0.000009308923,0.0002378245,0.0001196943,0.0001788606],"category_scores_gemma":[0.0001149809,0.00009293672,0.00009917276,0.0002701789,0.0001733575,0.00005162003,0.00005013297,0.0001245883,0.00002828827],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002239965,"about_ca_system_score_gemma":0.00005229325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003336858,"about_ca_topic_score_gemma":0.0001601105,"domain_scores_codex":[0.9987208,0.0004455916,0.0002911729,0.0002204969,0.00005482852,0.0002670675],"domain_scores_gemma":[0.9990309,0.0002899037,0.0002169859,0.000404509,0.00004390916,0.00001373502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008154509,0.0001124448,0.8025776,0.00002907987,0.00008341542,0.000001583976,0.001899505,0.00003717691,0.1945527,0.0002547555,0.0001145737,0.0002556328],"study_design_scores_gemma":[0.0004870297,0.0001935866,0.9920381,0.00003604083,0.00009709647,0.00003802362,0.0001117689,0.0000157911,0.006162023,0.0001568809,0.0005642754,0.00009938538],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952992,0.003545527,0.00001440406,0.00007359727,0.0002961015,0.0004540777,0.00003450661,0.0000171016,0.0002655251],"genre_scores_gemma":[0.9996676,0.0001415874,0.000008182327,0.00002850644,0.00002102662,0.00001404704,0.00001686133,0.00001255487,0.00008964899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1894605,"threshold_uncertainty_score":0.3789849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008457394976929983,"score_gpt":0.2114529591416418,"score_spread":0.2029955641647118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}