{"id":"W2995298606","doi":"10.1101/2019.12.17.877803","title":"The Tung Tree ( <i>Vernicia Fordii</i> ) Genome Provides A Resource for Understanding Genome Evolution and Oil Improvement","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Oil Palm Production and Sustainability","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Natural Science Foundation of China; Agricultural Research Service; Education Department of Hunan Province; U.S. Department of Agriculture","keywords":"Genome; Biology; Gene; Retrotransposon; Genetics; Sequence assembly; Whole genome sequencing; Reference genome; Gene family; DNA sequencing; Computational biology; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001880264,0.000480489,0.00039787,0.000081393,0.0008155588,0.000339949,0.0005579805,0.0003035091,0.00002382456],"category_scores_gemma":[0.0002925781,0.0004167902,0.0001658976,0.0002723633,0.0004143272,0.000217109,0.001024256,0.0004885893,0.00002667767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003601053,"about_ca_system_score_gemma":0.000227957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001288407,"about_ca_topic_score_gemma":0.00004233365,"domain_scores_codex":[0.9967514,0.0001387444,0.0005402039,0.001336871,0.0004702565,0.0007625705],"domain_scores_gemma":[0.9978296,0.0001378545,0.0004174807,0.001313982,0.00008420089,0.0002168507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003964866,0.000263465,0.0202548,0.001919395,0.0002761134,0.000007998115,0.0001976472,0.002209821,0.9700356,0.003613126,0.0006160251,0.0002095411],"study_design_scores_gemma":[0.003858486,0.0009005597,0.6398631,0.0003143574,0.0006121539,1.411315e-7,0.00113528,0.006208299,0.0145827,0.001135164,0.3272162,0.00417351],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.979105,0.001440621,0.01339218,0.001840844,0.0008816132,0.002630076,0.00016918,0.0003032533,0.0002372496],"genre_scores_gemma":[0.9978449,0.0001627954,0.0008556165,0.0001709492,0.0002488002,0.0004291889,5.456248e-7,0.00008565213,0.00020159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9554529,"threshold_uncertainty_score":0.9998284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01352227803554572,"score_gpt":0.2023099604139197,"score_spread":0.188787682378374,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}