{"id":"W2995764943","doi":"10.1016/bs.pmbts.2019.12.003","title":"Minimalistic coarse-grained modeling of viral capsid assembly","year":2019,"lang":"en","type":"article","venue":"Progress in molecular biology and translational science","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Ontario Ministry of Research, Innovation and Science","keywords":"Capsid; Icosahedral symmetry; Computational biology; Physics; Biology; Nanotechnology; Biophysics; Virology; Chemistry; Virus; Crystallography; Materials science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002123901,0.00006523928,0.00008856959,0.00005065819,0.00005314515,0.00001129558,0.0001382457,0.00004298065,0.0001443686],"category_scores_gemma":[0.000007186136,0.00005808767,0.00002348251,0.0001892515,0.0006026861,0.0001380247,0.00004470942,0.00007008691,0.00001143888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001088122,"about_ca_system_score_gemma":0.000019307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006949448,"about_ca_topic_score_gemma":0.00003033558,"domain_scores_codex":[0.999333,0.00002551866,0.0001467892,0.000243431,0.00008836677,0.0001629272],"domain_scores_gemma":[0.9998249,0.00001827617,0.00003565036,0.00007545287,0.00001198532,0.00003377946],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002593239,0.00005057297,0.1118087,0.000006417329,0.000003703085,0.000002391537,0.0001337512,0.001840276,0.8753208,0.007049395,4.273368e-7,0.003757692],"study_design_scores_gemma":[0.001386007,0.0003383639,0.5175139,0.00007557928,0.00002610494,0.0000530852,0.00007881517,0.4174495,0.0497672,0.01251435,0.0002915959,0.0005055524],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937073,0.000154925,0.004493997,0.0001921863,0.00006407141,0.0001229259,0.000007936587,0.000005279282,0.001251397],"genre_scores_gemma":[0.9923728,0.000004888506,0.007546084,0.00004740056,0.000003298148,0.000006201949,0.000006500434,0.000002703679,0.00001015134],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8255536,"threshold_uncertainty_score":0.2368747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007626532371616112,"score_gpt":0.2889440099370784,"score_spread":0.2813174775654623,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}