{"id":"W2995954534","doi":"10.3389/fimmu.2019.02866","title":"Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3–4 Months of Age","year":2019,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Manitoba; Children's Hospital Research Institute of Manitoba; University of British Columbia; Hospital for Sick Children; Public Health Ontario; BC Children's Hospital; SickKids Foundation; University of Toronto; University of Alberta","funders":"Canadian Institutes of Health Research; University of Manitoba","keywords":"Colonization; Clostridioides; Gut microbiome; Microbiome; Modality (human–computer interaction); Biology; Medicine; Microbiology; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002525598,0.00031792,0.0009709396,0.0004371528,0.00008642965,0.00002173637,0.0002703743,0.0004235584,0.0002656436],"category_scores_gemma":[0.0002059935,0.000278538,0.0001317397,0.0007359711,0.0003831181,0.00008430427,0.0002186713,0.0004662567,0.00002017052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008699446,"about_ca_system_score_gemma":0.0002211786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003678002,"about_ca_topic_score_gemma":0.00005618246,"domain_scores_codex":[0.9975892,0.0001539727,0.0006401083,0.0005524596,0.0003991601,0.0006651459],"domain_scores_gemma":[0.9987615,0.0001061966,0.0003046226,0.0005051135,0.000237629,0.00008495986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001648648,0.0005218735,0.2709102,0.0001131553,0.0004507639,0.00002920249,0.0004422859,0.000009560315,0.7175499,0.00001453154,0.007763414,0.0005465212],"study_design_scores_gemma":[0.006839178,0.001589978,0.1977122,0.000426397,0.0001463585,0.00002287209,0.0006085019,0.0005965211,0.7898811,0.00003351372,0.001734797,0.0004086618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946142,0.002225953,0.0001150009,0.0004845238,0.0004348376,0.001206251,0.0002752524,0.00005906974,0.0005849187],"genre_scores_gemma":[0.9951423,0.0005449664,0.0002665379,0.00005462398,0.00002870381,0.0000485521,0.0007706751,0.00005196852,0.003091718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07319802,"threshold_uncertainty_score":0.9999667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00925187733247336,"score_gpt":0.2394342317844292,"score_spread":0.2301823544519558,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}