{"id":"W2996199498","doi":"10.1038/s41564-019-0641-0","title":"Diet-derived galacturonic acid regulates virulence and intestinal colonization in enterohaemorrhagic Escherichia coli and Citrobacter rodentium","year":2019,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Health and Human Services","keywords":"Citrobacter rodentium; Microbiology; Biology; Citrobacter; Bacteroides; Escherichia coli; Pathogen; Gastrointestinal tract; Virulence; Secretion; Enterobacteriaceae; Bacteria; Gene; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001721316,0.0002111251,0.0002498652,0.00006963234,0.0000547604,0.00002949637,0.0001603955,0.0004317385,0.00002240163],"category_scores_gemma":[0.0001728508,0.0001881571,0.00003105497,0.0001256268,0.000234468,0.00000940405,0.000409254,0.0004637883,0.000007024325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003111304,"about_ca_system_score_gemma":0.0000518912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001193329,"about_ca_topic_score_gemma":0.0001581509,"domain_scores_codex":[0.9987244,0.0001479624,0.0001821582,0.000537684,0.00004272144,0.0003651004],"domain_scores_gemma":[0.9995223,0.00003433596,0.00007973632,0.000210174,0.00009921812,0.00005422035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000313299,0.00002849167,0.0880072,0.0000458742,0.00003332801,0.000004119849,0.00005356781,0.000002746988,0.9111603,0.00001878054,0.0002165163,0.0001157349],"study_design_scores_gemma":[0.001878721,0.001279044,0.4029819,0.00007171242,0.00002206391,0.000117831,0.00009209576,0.0001619627,0.5871263,0.00006831231,0.005773194,0.0004268937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927597,0.006217866,0.00003365541,0.0003267105,0.0001769099,0.0003650963,0.00001490745,0.00001263098,0.0000925377],"genre_scores_gemma":[0.9975188,0.0007785442,0.0006949061,0.0005402775,0.00006160951,0.00002064563,0.0001122594,0.00001924715,0.0002537536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3240341,"threshold_uncertainty_score":0.7672824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003563022065820809,"score_gpt":0.2283430315736177,"score_spread":0.2247800095077969,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}