{"id":"W2996431848","doi":"10.3201/eid2601.191241","title":"Phenotypic and Genotypic Correlates of Penicillin Susceptibility in Nontoxigenic <i>Corynebacterium diphtheriae</i>, British Columbia, Canada, 2015–2018","year":2019,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Corynebacterium diphtheriae; Multilocus sequence typing; Penicillin; Biology; Microbiology; Genotype; Whole genome sequencing; Antibiotic resistance; Typing; Diphtheria; Antibiotics; Genetics; Virology; Genome; Gene; Vaccination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004782927,0.0002711151,0.0002832081,0.0010661,0.001080428,0.001179251,0.0007496139,0.000345051,0.001590619],"category_scores_gemma":[0.003360198,0.0002066878,0.0001355412,0.001913128,0.0006930158,0.0002294776,0.0003996306,0.0007084872,0.0002669857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009311939,"about_ca_system_score_gemma":0.007549591,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9512932,"about_ca_topic_score_gemma":0.9642423,"domain_scores_codex":[0.9989951,0.00005569765,0.00008102291,0.0002017973,0.0003788549,0.00028763],"domain_scores_gemma":[0.9956627,0.0001864919,0.0008918957,0.000111649,0.002436308,0.0007110259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001547873,0.00003218108,0.9900947,0.00002926795,0.00002360858,0.0001692585,0.0003622838,0.0001199286,0.001218911,0.00004085714,0.001377039,0.006377236],"study_design_scores_gemma":[0.000001886413,0.00001651527,0.9986874,0.00001507585,0.000005818315,0.0001034223,0.0003429675,0.00007684751,0.0001460847,0.000007485312,0.0005929567,0.00000340438],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918012,0.0009109653,0.0001203887,0.0003134817,0.00001696875,0.00002467329,0.00359784,0.00001443281,0.003199896],"genre_scores_gemma":[0.9970155,0.0003810442,0.0001381871,0.0001186164,0.000006994594,0.000008457053,0.001637139,0.000006859797,0.0006872631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04870683,"threshold_uncertainty_score":0.09798729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002623760731839385,"score_gpt":0.1916030241534527,"score_spread":0.1889792634216133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}