{"id":"W2996431848","doi":"10.3201/eid2601.191241","title":"Phenotypic and Genotypic Correlates of Penicillin Susceptibility in Nontoxigenic <i>Corynebacterium diphtheriae</i>, British Columbia, Canada, 2015–2018","year":2019,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Corynebacterium diphtheriae; Multilocus sequence typing; Penicillin; Biology; Microbiology; Genotype; Whole genome sequencing; Antibiotic resistance; Typing; Diphtheria; Antibiotics; Genetics; Virology; Genome; Gene; Vaccination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001495481,0.0002172526,0.0003890893,0.00003603892,0.00008426009,0.00008551933,0.0001846043,0.0001453728,0.0005894747],"category_scores_gemma":[0.0001192785,0.0003142266,0.0001117189,0.0001452517,0.0001292271,0.00001907907,0.0001389416,0.0001262189,0.000007714549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008281956,"about_ca_system_score_gemma":0.0003929529,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4698949,"about_ca_topic_score_gemma":0.9244171,"domain_scores_codex":[0.9982815,0.000128122,0.0004259753,0.0005810899,0.0001777714,0.0004055483],"domain_scores_gemma":[0.99901,0.0000385499,0.0001851649,0.0004907512,0.0001179062,0.0001575944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007417908,0.0001858342,0.9449024,0.000124653,0.00008212212,0.000008823527,0.00005941717,0.00005209805,0.05194291,0.000002118056,0.0007937499,0.001771645],"study_design_scores_gemma":[0.001230934,0.0003197776,0.9925805,0.00006446579,0.00006147738,0.00002779371,0.0001125354,0.00003961854,0.0008636185,0.00007552034,0.0042017,0.0004220603],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994827,0.002978178,0.00001367203,0.00001435634,0.0008430851,0.0004106323,0.0002068782,0.00002921635,0.0006769521],"genre_scores_gemma":[0.9979931,0.0003264776,0.00001288521,0.0001024257,0.0001184049,0.00002706323,0.0001450644,0.00004648918,0.001228148],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4545222,"threshold_uncertainty_score":0.999931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002623760731839385,"score_gpt":0.1916030241534527,"score_spread":0.1889792634216133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}