{"id":"W2996791590","doi":"10.1186/s12870-019-2198-8","title":"Genome-scale mining of root-preferential genes from maize and characterization of their promoter activity","year":2019,"lang":"en","type":"article","venue":"BMC Plant Biology","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Gene; Genome; Scale (ratio); Genetics; Root (linguistics); Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001310182,0.0001001713,0.0002615069,0.00001770706,0.00002684474,0.000005563887,0.0001650445,0.0001812987,0.0001690741],"category_scores_gemma":[0.00001009002,0.00003874509,0.00004139967,0.00006499115,0.00008907953,0.00003212596,0.0001358732,0.00006231786,0.000006519752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003958469,"about_ca_system_score_gemma":0.000009797228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001345674,"about_ca_topic_score_gemma":0.0005531487,"domain_scores_codex":[0.9991578,0.0001958081,0.0001541539,0.0002598323,0.00005147207,0.0001809713],"domain_scores_gemma":[0.9995685,0.0001792959,0.0001290241,0.00005861073,0.00002896112,0.00003556875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001260702,0.0000245759,0.3316393,0.000006891566,0.00001387444,2.298033e-7,0.00002365721,5.411665e-8,0.6649899,0.000004610469,4.479792e-7,0.003170424],"study_design_scores_gemma":[0.00009862713,0.0001852415,0.6480857,0.000007421894,0.000003911631,0.000004698213,0.00001329833,0.00004112758,0.351208,0.0000221343,0.0002727536,0.00005706815],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973223,0.00006772789,0.00001397706,0.00004310744,0.00006535741,0.0002080812,0.002219009,0.00001073525,0.00004971055],"genre_scores_gemma":[0.9978557,0.00005480971,0.00006615913,0.000008055979,0.00005456918,0.00000514947,0.001918657,7.622564e-7,0.00003617613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3164465,"threshold_uncertainty_score":0.1851242,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02825326029320234,"score_gpt":0.2221283243959266,"score_spread":0.1938750641027242,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}