{"id":"W2997072134","doi":"10.1016/j.ympev.2019.106727","title":"RAD sequencing resolves the phylogeny, taxonomy and biogeography of Trichophoreae despite a recent rapid radiation (Cyperaceae)","year":2019,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Botany, Ecology, and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Collège Laflèche; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; University of Ottawa","keywords":"Biology; NdhF; Clade; Monophyly; Cyperaceae; Evolutionary biology; Phylogenetic tree; Biogeography; Taxon; Botany; Ecology; Poaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002891122,0.0001447529,0.0001881394,0.00002925323,0.0001974817,0.00002921274,0.00009928711,0.0000943062,0.00001580885],"category_scores_gemma":[0.00003152765,0.00006350706,0.00006586684,0.0003134071,0.0001630469,0.00002872441,0.00008358464,0.00007709381,0.000002093809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002765336,"about_ca_system_score_gemma":0.00001162906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003902959,"about_ca_topic_score_gemma":0.00006701811,"domain_scores_codex":[0.9990434,0.0001381787,0.000214112,0.000283109,0.0001071957,0.00021399],"domain_scores_gemma":[0.9995359,0.0001063571,0.000140153,0.00008364959,0.0000827998,0.00005113981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004177114,0.00003367223,0.1849906,0.00001408454,0.0000752549,9.417455e-7,0.00002748651,0.0000645578,0.779106,0.0001177279,0.00005792384,0.03546996],"study_design_scores_gemma":[0.0002789779,0.0004739005,0.9766895,0.000009936343,0.00005676855,0.000006083435,0.0003280009,0.0005138261,0.00745237,0.0006056134,0.01341912,0.0001658793],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9755496,0.02294194,0.0001735934,0.000437312,0.000102537,0.0005865263,0.00001855328,0.00001126718,0.0001787053],"genre_scores_gemma":[0.9932307,0.006035212,0.0005001735,0.0001194124,0.00005513413,0.00004414619,0.000004653951,0.000001537414,0.00000905124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7916989,"threshold_uncertainty_score":0.2589743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01621930892070056,"score_gpt":0.1890867675187714,"score_spread":0.1728674585980708,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}