{"id":"W2997886482","doi":"10.3390/microorganisms8010060","title":"Probiotic Supplementation in a Clostridium difficile-Infected Gastrointestinal Model Is Associated with Restoring Metabolic Function of Microbiota","year":2019,"lang":"en","type":"article","venue":"Microorganisms","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; McGill University","keywords":"Probiotic; Clostridium difficile; Gut flora; Microbiology; Biology; Clostridium; Lactobacillus; Feces; Prebiotic; Short-chain fatty acid; Antibiotics; Microbiome; Butyrate; Bacteria; Food science; Immunology; Fermentation; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003033181,0.0003306081,0.0006340136,0.0004543501,0.00005805884,0.00003315662,0.0001490603,0.000131205,0.0006231262],"category_scores_gemma":[0.0001066211,0.0002971064,0.0001191411,0.001056727,0.0000831498,0.0001107148,0.00008897175,0.0004895444,0.0000829593],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004065213,"about_ca_system_score_gemma":0.0005022542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000168891,"about_ca_topic_score_gemma":0.00007580825,"domain_scores_codex":[0.9976346,0.00007267029,0.0006086024,0.0005590988,0.0004940508,0.0006309202],"domain_scores_gemma":[0.998726,0.00007797324,0.0002349395,0.0004609697,0.0003638873,0.0001361984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007408001,0.0006833451,0.04704958,0.0001482142,0.00009401186,0.00002506553,0.0002926099,0.0002206911,0.9501632,0.0000416023,0.0003960025,0.0001448526],"study_design_scores_gemma":[0.00614193,0.001259853,0.03644527,0.00065096,0.0001934819,0.0001223098,0.0002553405,0.001649842,0.9529306,0.00001130221,0.00006926784,0.0002698957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997361,0.0001086047,0.0003030842,0.0003197035,0.00006385047,0.001271733,0.0001082256,0.00007493049,0.0003888512],"genre_scores_gemma":[0.9970025,0.00002490699,0.001067322,0.00009073033,0.00004711485,0.00001925223,0.0003268876,0.00007598742,0.001345252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01060431,"threshold_uncertainty_score":0.9999481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0159919214601056,"score_gpt":0.2566288543772449,"score_spread":0.2406369329171393,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}