{"id":"W2997904090","doi":"10.1080/22221751.2019.1701954","title":"Return of the founder Chikungunya virus to its place of introduction into Brazil is revealed by genomic characterization of exanthematic disease cases","year":2019,"lang":"en","type":"letter","venue":"Emerging Microbes & Infections","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Horizon 2020 Framework Programme; Ministério da Saúde; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Oxford; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Pan American Health Organization; International Development Research Centre","keywords":"Chikungunya; Transmission (telecommunications); Herd immunity; Biology; Genotype; Epidemiology; Virology; Disease; Persistence (discontinuity); Molecular epidemiology; Outbreak; Geography; Evolutionary biology; Genetics; Medicine; Vaccination; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003652161,0.0001667917,0.0001881855,0.0002279344,0.0006424764,0.0008079127,0.0002048867,0.00214291,0.001724164],"category_scores_gemma":[0.00388315,0.0001107047,0.0001904106,0.0001750889,0.0005208324,0.0004672893,0.0002432009,0.002568392,0.0006190835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008311726,"about_ca_system_score_gemma":0.0004757629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01341263,"about_ca_topic_score_gemma":0.017035,"domain_scores_codex":[0.9996476,0.00009827659,0.00003523499,0.00006404654,0.00005707668,0.00009771474],"domain_scores_gemma":[0.9990535,0.0003537334,0.0001647883,0.0001006343,0.0001860416,0.0001412037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000516533,0.0001656993,0.4467952,0.0003270997,0.00006853351,0.2282294,0.007931821,0.0003427374,0.02349999,0.005129256,0.1469959,0.1399979],"study_design_scores_gemma":[0.00008048741,0.0004424645,0.1931922,0.0006066303,0.00009922266,0.4250533,0.009687301,0.003760471,0.005511474,0.006270543,0.3551906,0.0001054406],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.4523107,0.008323088,0.003837933,0.4927422,0.006619174,0.00008204504,0.0005310777,0.0002070288,0.03534682],"genre_scores_gemma":[0.9276212,0.003209515,0.001241964,0.058113,0.004241553,0.00002006944,0.00009607302,0.00002940747,0.005427189],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01341263,"threshold_uncertainty_score":0.02666909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006853813118186475,"score_gpt":0.2523659952129372,"score_spread":0.2455121820947507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}