{"id":"W2998529923","doi":"10.1093/bioinformatics/btaa039","title":"<tt>incaRNAfbinv 2.0</tt>: a webserver and software with motif control for fragment-based design of RNAs","year":2020,"lang":"en","type":"article","venue":"Bioinformatics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université du Québec à Montréal","funders":"College of Natural Resources and Sciences, Humboldt State University; Centre National de la Recherche Scientifique; Ministry of Science and Technology","keywords":"Computer science; Web server; Fragment (logic); Software; Motif (music); Computational biology; Operating system; World Wide Web; Biology; Programming language; The Internet; Art","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001834477,0.002710915,0.001619947,0.001386264,0.0008102479,0.001865011,0.004412551,0.001573913,0.1515728],"category_scores_gemma":[0.003221836,0.001782794,0.001684859,0.001025172,0.0005789287,0.001608025,0.002183692,0.002945892,0.07477859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000928029,"about_ca_system_score_gemma":0.001405546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002152162,"about_ca_topic_score_gemma":0.00289581,"domain_scores_codex":[0.9991909,0.0001243964,0.00006163472,0.0002058702,0.0002877322,0.0001295255],"domain_scores_gemma":[0.9989643,0.0004966906,0.0001116465,0.0001658349,0.0001509385,0.0001106075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001322509,0.0001856722,0.001746222,0.0019773,0.0003365849,0.0005252983,0.0002463017,0.005041544,0.03438607,0.01151516,0.8341683,0.1085491],"study_design_scores_gemma":[0.001039242,0.0003519688,0.003737896,0.0005537769,0.0001765712,0.00117212,0.00007417781,0.08373362,0.1107994,0.03319367,0.7647046,0.0004629336],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004175732,0.0004942853,0.1904421,0.0003684732,0.0002980923,0.0002417163,0.05131031,0.7391404,0.01352893],"genre_scores_gemma":[0.05466777,0.000825202,0.3251763,0.001658412,0.0001597188,0.003524744,0.1898368,0.3919819,0.03216916],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1515728,"threshold_uncertainty_score":0.5070616,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01839855060877201,"score_gpt":0.2121089167791841,"score_spread":0.1937103661704121,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}