{"id":"W2998753307","doi":"10.1111/jeu.12784","title":"Transcriptome Analysis Identifies <i>Plasmodiophora brassicae</i> Secondary Infection Effector Candidates","year":2020,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Agriculture and Agri-Food Canada; Sveriges Lantbruksuniversitet; Saskatchewan Canola Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Effector; Transcriptome; Clubroot; Computational biology; Genetics; Botany; Gene; Cell biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001069563,0.0003299498,0.0003644266,0.0004283309,0.0003225844,0.0005342914,0.00009452074,0.0001947491,0.00157702],"category_scores_gemma":[0.0001362964,0.000135169,0.0004217379,0.000415337,0.0001140077,0.0001893011,0.0002477213,0.0004401516,0.0008954991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002940171,"about_ca_system_score_gemma":0.0002718774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001415788,"about_ca_topic_score_gemma":0.002121503,"domain_scores_codex":[0.9998939,0.000006773085,0.000004981687,0.00004443196,0.0000212989,0.00002857774],"domain_scores_gemma":[0.9999126,0.00001648276,0.00002178654,0.000007021398,0.00002141639,0.00002054286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001415809,0.00001300088,0.003844829,0.00009758087,0.00001121958,0.0001096932,0.00007405403,0.0001275539,0.991308,0.00006361182,0.0003134749,0.003895398],"study_design_scores_gemma":[0.00004674275,0.0006496657,0.6098661,0.00009854267,0.0001962826,0.00153074,0.0007956675,0.007814296,0.346714,0.0004411081,0.0318012,0.00004574006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9731564,0.001604579,0.005530803,0.0001505066,0.00002939127,0.00004275133,0.01563166,0.0004401299,0.003413905],"genre_scores_gemma":[0.9422163,0.001450259,0.01002535,0.0002109316,0.00002507883,0.00008842357,0.04086694,0.0001910204,0.004925711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00157702,"threshold_uncertainty_score":0.005275667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01003752397147321,"score_gpt":0.2039706769074932,"score_spread":0.1939331529360199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}