{"id":"W2998753307","doi":"10.1111/jeu.12784","title":"Transcriptome Analysis Identifies <i>Plasmodiophora brassicae</i> Secondary Infection Effector Candidates","year":2020,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Agriculture and Agri-Food Canada; Sveriges Lantbruksuniversitet; Saskatchewan Canola Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Effector; Transcriptome; Clubroot; Computational biology; Genetics; Botany; Gene; Cell biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001664982,0.0001495834,0.0004620841,0.00004587056,0.00009003649,0.00004785274,0.0002117223,0.0001125123,0.0005317026],"category_scores_gemma":[0.00004603919,0.0000626582,0.000401341,0.0005786764,0.00007431296,0.000110327,0.00002486159,0.0002096716,0.00004454011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002153465,"about_ca_system_score_gemma":0.00003003921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003601205,"about_ca_topic_score_gemma":0.000338653,"domain_scores_codex":[0.9989098,0.0001634065,0.0004287468,0.0001863872,0.00008220856,0.000229493],"domain_scores_gemma":[0.9992375,0.0001647667,0.0002788826,0.00003677688,0.00009873448,0.0001833866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001716201,0.00004582612,0.03800798,0.00001907655,0.0004593905,0.00004747148,0.00005819279,0.00005998002,0.9535982,0.000004268354,0.006487317,0.001040686],"study_design_scores_gemma":[0.001013218,0.00180249,0.7952272,0.00006245674,0.002262416,0.0003511342,0.0001429943,0.0001122811,0.1344665,0.000167442,0.06381108,0.0005808257],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957148,0.001956707,0.00004449536,0.001565713,0.0002446567,0.00007524886,0.0003179408,0.00001629226,0.00006414318],"genre_scores_gemma":[0.998108,0.0004916933,0.00003412057,0.0008825659,0.0003048879,0.000001002223,0.0001422794,0.000001083767,0.00003438718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8191317,"threshold_uncertainty_score":0.582177,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01003752397147321,"score_gpt":0.2039706769074932,"score_spread":0.1939331529360199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}