{"id":"W2999304756","doi":"10.1534/genetics.119.302978","title":"Impact of Chromosome Fusions on 3D Genome Organization and Gene Expression in Budding Yeast","year":2020,"lang":"en","type":"article","venue":"Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Instituto de Salud Carlos III; Ministerio de Ciencia e Innovación; European Regional Development Fund; Generalitat Valenciana; Agència de Gestió d'Ajuts Universitaris i de Recerca; Generalitat de Catalunya; Ministerio de Economía y Competitividad; Agence Nationale de la Recherche; European Commission; Centres de Recerca de Catalunya","keywords":"Biology; Genetics; Gene; Gene density; Locus (genetics); Transcription (linguistics); Gene expression; Genome; Genomic organization; Nuclear gene; Transcription factories; Human genome; Transcriptional regulation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003405137,0.0001062861,0.0001128019,0.0000311694,0.0000314914,0.00001076904,0.00009920685,0.0001053854,0.00002246116],"category_scores_gemma":[0.00003921342,0.0001020015,0.00002904308,0.0001196867,0.0000255832,0.000001306523,0.0001386747,0.00005386992,0.000002837475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001440365,"about_ca_system_score_gemma":0.00005133287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002105087,"about_ca_topic_score_gemma":0.00000363241,"domain_scores_codex":[0.9994034,0.00001933823,0.0001678807,0.0002098778,0.00007347616,0.0001260461],"domain_scores_gemma":[0.9996355,0.000003468607,0.00006895747,0.000162786,0.00005019327,0.00007909165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001305376,0.00003066145,0.01669282,0.00001215771,0.00001003802,0.00000161106,0.0001684866,0.007401497,0.9753745,0.00000399566,0.00002357887,0.0002675554],"study_design_scores_gemma":[0.001063998,0.001107558,0.2115934,0.00002583924,0.00001931966,0.00002347063,0.00008480023,0.005949603,0.7793916,0.00002691926,0.0003649796,0.0003484692],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984142,0.0002736789,0.001029364,0.00002874047,0.00002191508,0.0001007009,0.00006371552,0.000004439923,0.00006320418],"genre_scores_gemma":[0.9952391,0.0006168506,0.003784422,0.00005663006,0.00009537664,0.000001693517,0.0001735038,0.00002407472,0.000008282676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1959829,"threshold_uncertainty_score":0.41595,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007232884297858962,"score_gpt":0.2236904184814264,"score_spread":0.2164575341835674,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}