{"id":"W2999304756","doi":"10.1534/genetics.119.302978","title":"Impact of Chromosome Fusions on 3D Genome Organization and Gene Expression in Budding Yeast","year":2020,"lang":"en","type":"article","venue":"Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Instituto de Salud Carlos III; Ministerio de Ciencia e Innovación; European Regional Development Fund; Generalitat Valenciana; Agència de Gestió d'Ajuts Universitaris i de Recerca; Generalitat de Catalunya; Ministerio de Economía y Competitividad; Agence Nationale de la Recherche; European Commission; Centres de Recerca de Catalunya","keywords":"Biology; Genetics; Gene; Gene density; Locus (genetics); Transcription (linguistics); Gene expression; Genome; Genomic organization; Nuclear gene; Transcription factories; Human genome; Transcriptional regulation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001581656,0.0002942202,0.0002649399,0.000154223,0.0002466537,0.0004864703,0.0001903131,0.0002785327,0.0004021694],"category_scores_gemma":[0.0003336876,0.000198675,0.0002832326,0.0002047654,0.0003677653,0.0001766164,0.0004524064,0.0003737837,0.0001145209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007047739,"about_ca_system_score_gemma":0.0002323919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003197315,"about_ca_topic_score_gemma":0.003055675,"domain_scores_codex":[0.9998133,0.00002635477,0.00001367713,0.00003715009,0.0000796938,0.00002986905],"domain_scores_gemma":[0.9998152,0.00006744009,0.00005034755,0.00002305395,0.00001306386,0.00003099658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00012788,0.00003024613,0.0009376662,0.000031475,0.00001766713,0.00008667178,0.00002970429,0.009666953,0.9866517,0.0002805604,0.00002985426,0.002109687],"study_design_scores_gemma":[0.00001878848,0.0002701494,0.01128374,0.000007783357,0.00002855853,0.0001759092,0.00009339793,0.04007793,0.9465377,0.0003001759,0.001183083,0.00002275159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971716,0.0002703068,0.002091339,0.00003122748,0.000005911954,0.000004301222,0.00008949581,0.00004298715,0.0002929],"genre_scores_gemma":[0.9981646,0.0002186742,0.00127907,0.00002512837,0.000001138756,0.000005755845,0.0001057857,0.00002142422,0.0001784321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003197315,"threshold_uncertainty_score":0.006357431,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007232884297858962,"score_gpt":0.2236904184814264,"score_spread":0.2164575341835674,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}