{"id":"W2999444201","doi":"10.1053/j.gastro.2020.01.024","title":"Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood","year":2020,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":297,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Bundesanstalt für Landwirtschaft und Ernährung; Joint Programming Initiative A healthy diet for a healthy life; Deutsche Forschungsgemeinschaft; McMaster University","keywords":"Firmicutes; Bacteroidetes; Interquartile range; Atopic dermatitis; Microbiome; Breastfeeding; Gut flora; Prevotella; Bacteroides; Allergy; Physiology; Bifidobacterium; Medicine; Proteobacteria; Biology; Immunology; Pediatrics; Internal medicine; Lactobacillus; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003234142,0.00009747234,0.0002654158,0.00004178391,0.00004810226,0.000004271472,0.00008647094,0.00006752272,0.000004172698],"category_scores_gemma":[0.0000150154,0.00007670935,0.0000374457,0.0002144081,0.00009502302,0.000003116436,0.0001097512,0.00007554339,6.006747e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007774809,"about_ca_system_score_gemma":0.00006839163,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003744857,"about_ca_topic_score_gemma":0.02485524,"domain_scores_codex":[0.9992597,0.00006323144,0.0002394324,0.0002354784,0.00004157113,0.0001606553],"domain_scores_gemma":[0.9996608,0.000009239579,0.0001519855,0.0001174265,0.00002853761,0.00003194815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001668361,0.00006156364,0.9448295,0.0000106107,0.0004697882,1.218956e-7,0.002167866,0.00002693103,0.05219139,0.000005097821,0.00001513156,0.000055195],"study_design_scores_gemma":[0.001014223,0.0003689018,0.9972329,0.000008143775,0.0001081148,7.094468e-7,0.00008944165,0.00001641782,0.001009761,0.000006874919,0.00009984737,0.00004472435],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984,0.0001270021,0.0007067326,0.0003278227,0.000009666941,0.0001635206,0.0002573372,0.000002165942,0.000005797149],"genre_scores_gemma":[0.9966502,0.0000788606,0.002927714,0.0001935014,0.000006914284,0.000006302856,0.0001277045,0.000006201168,0.000002567006],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05240337,"threshold_uncertainty_score":0.9929386,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009004103439273126,"score_gpt":0.222268923257056,"score_spread":0.2132648198177829,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}