{"id":"W2999444201","doi":"10.1053/j.gastro.2020.01.024","title":"Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood","year":2020,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":297,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Bundesanstalt für Landwirtschaft und Ernährung; Joint Programming Initiative A healthy diet for a healthy life; Deutsche Forschungsgemeinschaft; McMaster University","keywords":"Firmicutes; Bacteroidetes; Interquartile range; Atopic dermatitis; Microbiome; Breastfeeding; Gut flora; Prevotella; Bacteroides; Allergy; Physiology; Bifidobacterium; Medicine; Proteobacteria; Biology; Immunology; Pediatrics; Internal medicine; Lactobacillus; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000680118,0.0002284113,0.0002450557,0.0005684599,0.000429249,0.0006908275,0.0001882054,0.0003412604,0.0004755816],"category_scores_gemma":[0.001635939,0.0002962874,0.0004283246,0.0007858737,0.000224241,0.0003517705,0.0005382626,0.0005366515,0.0001243748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002904304,"about_ca_system_score_gemma":0.0004202113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01066602,"about_ca_topic_score_gemma":0.01379958,"domain_scores_codex":[0.99962,0.0001163962,0.00003119144,0.00009081941,0.0000582525,0.00008326241],"domain_scores_gemma":[0.9991924,0.0001222096,0.0002681227,0.000106005,0.0001680226,0.0001432317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002144965,0.00003213996,0.9940714,0.000009001259,0.00006499252,0.00005741075,0.0001929998,0.00003132151,0.003597394,0.0000189661,0.00005572571,0.001654016],"study_design_scores_gemma":[0.000001124532,0.00006069575,0.9992669,0.000003769312,0.00001539017,0.0001030189,0.0001592628,0.00005268523,0.0002315371,0.000004880575,0.00009918337,0.000001466488],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999121,0.0002448994,0.0001399086,0.00001776846,0.000003637739,0.000003341576,0.0003294064,0.00000232486,0.0001376281],"genre_scores_gemma":[0.998724,0.0001554903,0.0003488642,0.00001958459,0.000002395453,0.000008623436,0.0004918792,0.000003971999,0.000245145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01066602,"threshold_uncertainty_score":0.02120787,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009004103439273126,"score_gpt":0.222268923257056,"score_spread":0.2132648198177829,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}