{"id":"W3000094261","doi":"10.1093/jnci/djz246","title":"A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer","year":2019,"lang":"en","type":"article","venue":"JNCI Journal of the National Cancer Institute","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Cancer Care Ontario; Mount Sinai Hospital","funders":"Intramural Research Program; National Institute of Diabetes and Digestive and Kidney Diseases; U.S. Department of Health and Human Services; National Cancer Institute; National Institutes of Health; Division of Cancer Epidemiology and Genetics, National Cancer Institute; International Foundation for Research in Paraplegia; World Health Organization","keywords":"Transcriptome; Pancreatic cancer; Candidate gene; Gene; Biology; Computational biology; Genetics; Bioinformatics; Cancer; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008584879,0.0002809311,0.0004259873,0.0007923005,0.0003809711,0.0005623056,0.0002186997,0.0003484446,0.001521894],"category_scores_gemma":[0.001548019,0.0002102468,0.0005933673,0.001410563,0.0002694966,0.0001731486,0.0004638055,0.0003995135,0.0001845706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002094485,"about_ca_system_score_gemma":0.0003123358,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009235641,"about_ca_topic_score_gemma":0.001452263,"domain_scores_codex":[0.9994481,0.000128491,0.00003578708,0.000245269,0.00008122014,0.00006105833],"domain_scores_gemma":[0.998894,0.0003927373,0.0003855215,0.000134151,0.00006323564,0.000130282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006093703,0.00006439883,0.9469403,0.00006662136,0.0008441643,0.0007494818,0.0001253647,0.0006088162,0.04184701,0.0001575359,0.0005743759,0.007412597],"study_design_scores_gemma":[0.00002614713,0.00006706797,0.9957312,0.000007804882,0.0003292005,0.0006153041,0.00007330515,0.0011008,0.001223323,0.0002301895,0.0005898062,0.000005811263],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964209,0.0004708942,0.001460559,0.0001077141,0.000007800789,0.000005322427,0.001120884,0.00004156473,0.0003644159],"genre_scores_gemma":[0.9970751,0.0002049474,0.001121048,0.00005256696,0.000009021993,0.000009806,0.001403143,0.000009798652,0.0001145336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001521894,"threshold_uncertainty_score":0.00509119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07391168805801743,"score_gpt":0.4044419918425481,"score_spread":0.3305303037845306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}