{"id":"W3000094261","doi":"10.1093/jnci/djz246","title":"A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer","year":2019,"lang":"en","type":"article","venue":"JNCI Journal of the National Cancer Institute","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Cancer Care Ontario; Mount Sinai Hospital","funders":"Intramural Research Program; National Institute of Diabetes and Digestive and Kidney Diseases; U.S. Department of Health and Human Services; National Cancer Institute; National Institutes of Health; Division of Cancer Epidemiology and Genetics, National Cancer Institute; International Foundation for Research in Paraplegia; World Health Organization","keywords":"Transcriptome; Pancreatic cancer; Candidate gene; Gene; Biology; Computational biology; Genetics; Bioinformatics; Cancer; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00165382,0.0001360951,0.0005410883,0.0001468741,0.000169887,0.00003438392,0.00024912,0.00009456436,0.0002295001],"category_scores_gemma":[0.001244521,0.00008762558,0.0002518577,0.0002596999,0.0000730085,0.0002867306,0.0000299298,0.0003125871,0.000006194565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002014147,"about_ca_system_score_gemma":0.002146697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007477154,"about_ca_topic_score_gemma":0.002369937,"domain_scores_codex":[0.9976308,0.0000756648,0.0005962815,0.0001785017,0.001277303,0.0002413947],"domain_scores_gemma":[0.9969854,0.000364352,0.000542293,0.0001376315,0.001886828,0.00008345964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000863768,0.0003765921,0.9774645,0.0001226167,0.001011301,0.000001933546,0.0005647049,0.0004122013,0.0119759,0.0000608235,0.006814172,0.0003315087],"study_design_scores_gemma":[0.006848696,0.0004161051,0.9689261,0.0002355276,0.0009424082,0.00001653693,0.0002687621,0.0004179516,0.001075125,0.0003223344,0.02041153,0.0001188666],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885997,0.0008256967,0.0001864569,0.006241793,0.002384436,0.001276646,0.0001323396,0.000007520569,0.0003454427],"genre_scores_gemma":[0.9913237,0.0003603656,0.0002630913,0.001030179,0.0008671983,0.0001299871,0.000005266131,0.00001341218,0.006006813],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01359736,"threshold_uncertainty_score":0.5266924,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07391168805801743,"score_gpt":0.4044419918425481,"score_spread":0.3305303037845306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}