{"id":"W3000300130","doi":"10.3389/fimmu.2019.02874","title":"Transcriptome Profiling of Bovine Macrophages Infected by Mycobacterium avium spp. paratuberculosis Depicts Foam Cell and Innate Immune Tolerance Phenotypes","year":2020,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Sherbrooke","funders":"Agriculture and Agri-Food Canada; Université de Sherbrooke; Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Compute Canada; Dairy Farmers of Canada","keywords":"Paratuberculosis; Biology; Innate immune system; Immune system; Immunology; Transcriptome; Gene expression profiling; Microbiology; Gene; Gene expression; Mycobacterium; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001734173,0.0001639527,0.0004100345,0.0003743403,0.000309973,0.0004010776,0.00008447277,0.0002783089,0.000485442],"category_scores_gemma":[0.0001540556,0.0001246503,0.0002541474,0.0003704984,0.0001546962,0.0001546563,0.0002194034,0.0002898285,0.000265656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001872219,"about_ca_system_score_gemma":0.0001585671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001299523,"about_ca_topic_score_gemma":0.001883567,"domain_scores_codex":[0.9998335,0.00001981032,0.000008601024,0.00004791647,0.00003481575,0.00005545234],"domain_scores_gemma":[0.999905,0.0000201251,0.00002518304,0.000005247742,0.00002707353,0.00001737912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003661484,0.00001627776,0.008447294,0.0001331311,0.00001589164,0.00009387075,0.0003045653,0.00006473503,0.9877639,0.00002770827,0.00009095489,0.002675434],"study_design_scores_gemma":[0.00002234594,0.0009020072,0.8264558,0.0001164474,0.0001833995,0.0007988095,0.002231219,0.002921347,0.1561249,0.0002666745,0.009929619,0.0000473752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931866,0.003105064,0.000916964,0.00006371547,0.00002091248,0.00001133522,0.001997162,0.00002368838,0.0006745218],"genre_scores_gemma":[0.9914994,0.001636908,0.00163323,0.0001526346,0.00002054225,0.0000449608,0.003577498,0.00001688878,0.001417888],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299523,"threshold_uncertainty_score":0.002583861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00848302012223622,"score_gpt":0.2321093856254181,"score_spread":0.2236263655031819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}