{"id":"W3000342922","doi":"10.1038/s42003-019-0727-5","title":"The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of Ottawa; University of Victoria; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Canadian Institutes of Health Research; Alberta Innovates","keywords":"Campylobacter jejuni; Microbiology; Biology; Pathogen; Bacteroides fragilis; Operon; Bacteroides; Enzyme; Bacteroides thetaiotaomicron; Biochemistry; Fucose; Bacteria; Galactose; Mutant; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001186889,0.0004632748,0.0001902444,0.0001925753,0.0001741127,0.0003519976,0.0001539525,0.000294628,0.0005916379],"category_scores_gemma":[0.0001841984,0.00007728815,0.0001419653,0.0001835793,0.0001507444,0.0002770067,0.0002277335,0.0002887647,0.0001996061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002243287,"about_ca_system_score_gemma":0.0003351925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001926524,"about_ca_topic_score_gemma":0.001819932,"domain_scores_codex":[0.9999199,0.00001294869,0.00000506774,0.00001930297,0.00001919917,0.0000235756],"domain_scores_gemma":[0.9999495,0.000009508477,0.00001181776,0.000005242663,0.000009899224,0.00001414302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007728896,0.00004005071,0.004387151,0.00009084849,0.000006699946,0.000119032,0.00003180778,0.0001446474,0.9880831,0.00009897786,0.00004728551,0.006873233],"study_design_scores_gemma":[0.00001002574,0.0004720837,0.06766341,0.00004102866,0.00004159,0.001400054,0.0006296522,0.00143331,0.9205902,0.000394856,0.007307355,0.00001643437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941824,0.001762581,0.002197626,0.0002329837,0.00001933754,0.00001823993,0.0002663565,0.00003768024,0.001282804],"genre_scores_gemma":[0.9921778,0.001038516,0.004417353,0.00004087864,0.000008816412,0.0000105049,0.000788374,0.000006521312,0.001511191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001926524,"threshold_uncertainty_score":0.003830671,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01735717511593874,"score_gpt":0.2429505710937674,"score_spread":0.2255933959778287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}