{"id":"W3000342922","doi":"10.1038/s42003-019-0727-5","title":"The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of Ottawa; University of Victoria; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Canadian Institutes of Health Research; Alberta Innovates","keywords":"Campylobacter jejuni; Microbiology; Biology; Pathogen; Bacteroides fragilis; Operon; Bacteroides; Enzyme; Bacteroides thetaiotaomicron; Biochemistry; Fucose; Bacteria; Galactose; Mutant; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001006627,0.0001523741,0.0001359382,0.0000167965,0.0003738497,0.00005165071,0.0007259589,0.00007521226,0.00003926623],"category_scores_gemma":[0.0001256984,0.0001083459,0.00005555646,0.00009881398,0.0003880661,0.00000744135,0.0003873284,0.0001816548,0.00002670955],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007641078,"about_ca_system_score_gemma":0.0000540957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002335784,"about_ca_topic_score_gemma":0.00009993425,"domain_scores_codex":[0.9989049,0.0003295894,0.0002233824,0.000283574,0.00005170504,0.0002068943],"domain_scores_gemma":[0.9985505,0.00004442968,0.000138963,0.001015795,0.0001589676,0.0000913033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001811011,0.00005934364,0.02680831,0.000002084176,0.00005846246,6.111548e-7,0.00006565078,0.000004530298,0.9688876,0.0006347311,0.0009098679,0.002387694],"study_design_scores_gemma":[0.001784147,0.001267939,0.07945283,0.0000263398,0.0001595209,0.0001587528,0.0008975016,0.0006979274,0.104875,0.0004242802,0.8095869,0.0006688691],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9606295,0.002249516,0.009512199,0.02643044,0.0001542399,0.0002906696,0.0002821392,0.00006452011,0.0003867359],"genre_scores_gemma":[0.9865881,0.001086905,0.007229206,0.001460131,0.0003071298,0.00004092304,0.00318853,0.0000213922,0.00007771487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8640127,"threshold_uncertainty_score":0.4418219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01735717511593874,"score_gpt":0.2429505710937674,"score_spread":0.2255933959778287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}