{"id":"W3000691591","doi":"10.1007/s10493-019-00459-0","title":"Identification of bacteria in the Rocky Mountain wood tick, Dermacentor andersoni, using single-strand conformation polymorphism (SSCP) and DNA sequencing","year":2020,"lang":"en","type":"article","venue":"Experimental and Applied Acarology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Animal ecology; Single-strand conformation polymorphism; Zoology; Dermacentor; Tick; DNA sequencing; 16S ribosomal RNA; Firmicutes; GroEL; Ribosomal DNA; Microbiology; Bacteria; Ecology; Genetics; Botany; Ixodidae; Phylogenetics; Polymerase chain reaction; DNA; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009593463,0.0001374117,0.0002111196,0.00005426086,0.0001168166,0.0000187816,0.00008156853,0.0001330588,0.00005541147],"category_scores_gemma":[0.000009975746,0.0001157048,0.00002386047,0.0000776921,0.0002365615,0.0001129164,0.00004952972,0.0001196284,0.000006300137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004132825,"about_ca_system_score_gemma":0.00002258217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004569319,"about_ca_topic_score_gemma":0.000004711984,"domain_scores_codex":[0.9991828,0.00009456377,0.0002933152,0.0002094783,0.00003132299,0.0001884784],"domain_scores_gemma":[0.9996923,0.00004824463,0.0001430422,0.0000799711,0.00001150113,0.00002499984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002028319,0.00006489216,0.001223135,0.00001979789,0.00003857552,0.000001119998,0.006399541,0.000009041501,0.9910053,0.0008520764,0.00001917632,0.0001645396],"study_design_scores_gemma":[0.001851152,0.0001889481,0.005197226,0.000006968879,0.00003949345,0.0001078199,0.007719846,0.0001707949,0.9843844,0.00008431764,0.000112004,0.0001370272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973387,0.001748577,0.0001456252,0.0002012712,0.00007453594,0.000309417,0.00001899055,0.00002192215,0.000140977],"genre_scores_gemma":[0.9992685,0.00001488094,0.00001670185,0.0005867961,0.00002758386,0.00002305198,0.00005209118,0.000008279807,0.000002087682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00662087,"threshold_uncertainty_score":0.4718304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02292025817691945,"score_gpt":0.24208929932358,"score_spread":0.2191690411466606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}