{"id":"W3000691591","doi":"10.1007/s10493-019-00459-0","title":"Identification of bacteria in the Rocky Mountain wood tick, Dermacentor andersoni, using single-strand conformation polymorphism (SSCP) and DNA sequencing","year":2020,"lang":"en","type":"article","venue":"Experimental and Applied Acarology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Animal ecology; Single-strand conformation polymorphism; Zoology; Dermacentor; Tick; DNA sequencing; 16S ribosomal RNA; Firmicutes; GroEL; Ribosomal DNA; Microbiology; Bacteria; Ecology; Genetics; Botany; Ixodidae; Phylogenetics; Polymerase chain reaction; DNA; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001698697,0.0001969733,0.00009105263,0.0008979805,0.0002827039,0.0003610429,0.0001341745,0.0003571325,0.0002936401],"category_scores_gemma":[0.0004476334,0.0001283133,0.0001208401,0.0003194785,0.0002519752,0.0001109636,0.0001315645,0.000215232,0.0001521068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001045757,"about_ca_system_score_gemma":0.0002100376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002280656,"about_ca_topic_score_gemma":0.003887633,"domain_scores_codex":[0.9998384,0.00002727916,0.00001593524,0.00004852066,0.00004361817,0.0000262181],"domain_scores_gemma":[0.9997191,0.00008661563,0.00007659046,0.00001508857,0.00005854656,0.00004404348],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002350797,0.00008848767,0.03255465,0.00005713009,0.00001099298,0.0001839231,0.0002497349,0.0001333896,0.9596459,0.00006247583,0.00003325254,0.006745006],"study_design_scores_gemma":[0.00003326314,0.0009969098,0.6398726,0.00004202931,0.0001087696,0.001885826,0.001229754,0.002311322,0.3509577,0.0001354303,0.002410352,0.0000160111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99863,0.0001965167,0.0004988497,0.00002259569,0.000003707212,0.00001552232,0.0002182623,0.000005186066,0.0004092317],"genre_scores_gemma":[0.9945624,0.0002612697,0.003630184,0.00003587413,0.000008056756,0.00002238789,0.0007276151,0.000003333685,0.0007488101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002280656,"threshold_uncertainty_score":0.004534781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02292025817691945,"score_gpt":0.24208929932358,"score_spread":0.2191690411466606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}