{"id":"W3000710932","doi":"10.1093/jac/dkz550","title":"Klebsiella pneumoniae ST307 with OXA-181: threat of a high-risk clone and promiscuous plasmid in a resource-constrained healthcare setting","year":2020,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Pretoria; National Health Laboratory Service; Calgary Laboratory Services","keywords":"Klebsiella pneumoniae; Plasmid; clone (Java method); Microbiology; Biology; Klebsiella; Health care; Medicine; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002637679,0.0002107768,0.0004776111,0.00006457936,0.00004372108,0.00002857879,0.0001890234,0.0001653341,0.000007896216],"category_scores_gemma":[0.00005126882,0.0001694659,0.00009160137,0.0001379589,0.0001902604,0.00001010293,0.00003612421,0.0002668559,3.509012e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000195475,"about_ca_system_score_gemma":0.0001861215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003655351,"about_ca_topic_score_gemma":0.00004604433,"domain_scores_codex":[0.998672,0.00009735973,0.0005663858,0.0002680957,0.0001477481,0.0002484114],"domain_scores_gemma":[0.9988943,0.00002480654,0.0006773433,0.0001589193,0.0001223999,0.0001222001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003063266,0.00008548307,0.06296338,0.0001475437,0.0001320153,0.00004290796,0.0006433825,0.00006729125,0.9299691,0.00000533331,0.0009631679,0.0019171],"study_design_scores_gemma":[0.007608353,0.002799455,0.0361281,0.0005589357,0.00004567911,0.0005450944,0.0005576254,0.00004012666,0.9486668,0.00002620751,0.002619849,0.0004037433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923838,0.0002398259,0.0003217486,0.006730064,0.00003447996,0.000214514,0.00003846359,0.00000495012,0.00003211971],"genre_scores_gemma":[0.9918033,0.0009841452,0.005706233,0.001234358,0.0002051107,3.316434e-7,0.000009809492,0.0000394265,0.00001722544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02683528,"threshold_uncertainty_score":0.6910621,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005293676294504287,"score_gpt":0.2136201788671093,"score_spread":0.208326502572605,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}